Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

(2020) Renmao Tian et al.   Microbiome

Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer

(2020) Ji-Won Moon et al.   CHEMOSPHERE

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

A Brief History of Protein Sorting Prediction

(2019) Henrik Nielsen et al.   PROTEIN JOURNAL

Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation

(2019) Michael P. Thorgersen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle

(2018) Xiaoxuan Ge et al.   ENVIRONMENTAL MICROBIOLOGY

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Molybdenum cofactor and human disease

(2016) Guenter Schwarz   CURRENT OPINION IN CHEMICAL BIOLOGY

Transcriptional and metabolic regulation of denitrification in P aracoccus denitrificans allows low but significant activity of nitrous oxide reductase under oxic conditions

(2016) Zhi Qu et al.   ENVIRONMENTAL MICROBIOLOGY

Geochemistry of dissolved aluminum at low pH: Extent and significance of Al–Fe(III) coprecipitation below pH 4.0

(2016) Javier Sánchez-España et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria

(2015) Israel M. Scott et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments

(2015) Michael P. Thorgersen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Baseline and premining geochemical characterization of mined sites

(2015) D. Kirk Nordstrom   APPLIED GEOCHEMISTRY

Driving mechanism and sources of groundwater nitrate contamination in the rapidly urbanized region of south China

(2015) Qianqian Zhang et al.   JOURNAL OF CONTAMINANT HYDROLOGY

Single-experiment displacement assay for quantifying high-affinity binding by isothermal titration calorimetry

(2015) Georg Krainer et al.   METHODS

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

(2015) Mark B. Smith et al.   mBio

grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Mononuclear Molybdenum Enzymes

(2014) Russ Hille et al.   CHEMICAL REVIEWS

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization

(2014) W. Andrew Lancaster et al.   Metallomics

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

Occurrence of molybdenum in British surface water and groundwater: Distributions, controls and implications for water supply

(2013) P.L. Smedley et al.   APPLIED GEOCHEMISTRY

Hydrogeophysical investigations of the former S-3 ponds contaminant plumes, Oak Ridge Integrated Field Research Challenge site, Tennessee

(2013) A. Revil et al.   GEOPHYSICS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Pseudomonas aeruginosa PA1006, Which Plays a Role in Molybdenum Homeostasis, Is Required for Nitrate Utilization, Biofilm Formation, and Virulence

(2013) Melanie J. Filiatrault et al.   PLoS One

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Molybdenum limitation of microbial nitrogen assimilation in aquatic ecosystems and pure cultures

(2012) Jennifer B. Glass et al.   Frontiers in Microbiology

Binding of ReO4 − with an engineered MoO4 2−-binding protein: towards a new approach in radiopharmaceutical applications

(2011) Baikuntha P. Aryal et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Mercury and Other Heavy Metals Influence Bacterial Community Structure in Contaminated Tennessee Streams

(2010) Tatiana A. Vishnivetskaya et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins

(2009) Kaspar Hollenstein et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

A role for tungsten in the biology ofCampylobacter jejuni: tungstate stimulates formate dehydrogenase activity and is transported via an ultra-high affinity ABC system distinct from the molybdate transporter

(2009) Jonathan P. Smart et al.   MOLECULAR MICROBIOLOGY

Molybdoproteomes and Evolution of Molybdenum Utilization

(2008) Yan Zhang et al.   JOURNAL OF MOLECULAR BIOLOGY

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

Molybdenum limitation of asymbiotic nitrogen fixation in tropical forest soils

(2008) Alexander R. Barron et al.   Nature Geoscience

Spreading Dead Zones and Consequences for Marine Ecosystems

(2008) R. J. Diaz et al.   SCIENCE

Lipoprotein biogenesis in Gram-positive bacteria: knowing when to hold ‘em, knowing when to fold ‘em

(2008) Matthew I. Hutchings et al.   TRENDS IN MICROBIOLOGY