Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection

Organoids as Oracles for Precision Medicine in Rectal Cancer

(2020) Kevin S. Kolahi et al.   Cell Stem Cell

Genetic Manipulation of Human Intestinal Enteroids Demonstrates the Necessity of a Functional Fucosyltransferase 2 Gene for Secretor-Dependent Human Norovirus Infection

(2020) Kei Haga et al.   mBio

Controlling Epithelial Polarity: A Human Enteroid Model for Host-Pathogen Interactions

(2019) Julia Y. Co et al.   Cell Reports

Human Norovirus Cultivation in Nontransformed Stem Cell-Derived Human Intestinal Enteroid Cultures: Success and Challenges

(2019) Mary K. Estes et al.   Viruses-Basel

Heparan Sulfate Proteoglycans and Viral Attachment: True Receptors or Adaptation Bias?

(2019) Cagno et al.   Viruses-Basel

Novel Segment- and Host-Specific Patterns of Enteroaggregative Escherichia coli Adherence to Human Intestinal Enteroids

(2018) Anubama Rajan et al.   mBio

Human organoid cultures: transformative new tools for human virus studies

(2018) Sasirekha Ramani et al.   Current Opinion in Virology

Outbreak of multiple strains of non-O157 Shiga toxin-producing and enteropathogenic Escherichia coli associated with rocket salad, Finland, autumn 2016

(2018) Sohvi Kinnula et al.   Eurosurveillance

Organoid Modeling of the Tumor Immune Microenvironment

(2018) James T. Neal et al.   CELL

A paradox of transcriptional and functional innate interferon responses of human intestinal enteroids to enteric virus infection

(2017) Kapil Saxena et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alterations in Gut Microbiota and Immunity by Dietary Fat

(2017) Bo-Gie Yang et al.   YONSEI MEDICAL JOURNAL

A primary human macrophage-enteroid co-culture model to investigate mucosal gut physiology and host-pathogen interactions

(2017) Gaelle Noel et al.   Scientific Reports

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

(2016) Mahesh S. Desai et al.   CELL

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Replication of human noroviruses in stem cell-derived human enteroids

(2016) K. Ettayebi et al.   SCIENCE

Human Clostridium difficile infection: altered mucus production and composition

(2015) Melinda A. Engevik et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Human Enteroids/Colonoids and Intestinal Organoids Functionally Recapitulate Normal Intestinal Physiology and Pathophysiology

(2015) Nicholas C. Zachos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human Intestinal Enteroids: a New Model To Study Human Rotavirus Infection, Host Restriction, and Pathophysiology

(2015) Kapil Saxena et al.   JOURNAL OF VIROLOGY

Human enteroids as an ex-vivo model of host–pathogen interactions in the gastrointestinal tract

(2014) Jennifer Foulke-Abel et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

The Presence of the pAA Plasmid in the German O104:H4 Shiga Toxin Type 2a (Stx2a)–Producing Enteroaggregative Escherichia coli Strain Promotes the Translocation of Stx2a Across an Epithelial Cell Monolayer

(2014) Nadia Boisen et al.   JOURNAL OF INFECTIOUS DISEASES

Structural Insight into Host Recognition by Aggregative Adherence Fimbriae of Enteroaggregative Escherichia coli

(2014) Andrea A. Berry et al.   PLoS Pathogens

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence

(2013) Fernando Ruiz-Perez et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Efficacy of a Travelers' Diarrhea Vaccine System in Travelers to India: Table 1

(2013) Robert Steffen et al.   JOURNAL OF TRAVEL MEDICINE

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota

(2013) P. C. Kashyap et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications

(2013) T. Sato et al.   SCIENCE

Human enteroids: preclinical models of non-inflammatory diarrhea

(2013) Olga Kovbasnjuk et al.   Stem Cell Research & Therapy

Heparan Sulfate Biosynthesis

(2012) Johan Kreuger et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Chaperone-usher pathways: diversity and pilus assembly mechanism

(2012) A. Busch et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Crystallization and initial crystallographic analysis of AafA: the major adhesive subunit of the enteroaggregativeEscherichia coliAAF/II pilus

(2011) Yi Yang et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

EHEC/EAEC O104:H4 strain linked with the 2011 German outbreak of haemolytic uremic syndrome enters into the viable but non-culturable state in response to various stresses and resuscitates upon stress relief

(2011) Philipp Aurass et al.   ENVIRONMENTAL MICROBIOLOGY

Outbreak of Hemolytic-Uremic Syndrome Linked to Shiga Toxin-Producing Enteroaggregative Escherichia coli O104:H4

(2011)   PEDIATRIC RESEARCH

IS3 profiling identifies the enterohaemorrhagic Escherichia coli O-island 62 in a distinct enteroaggregative E. coli lineage

(2011) Iruka N Okeke et al.   Gut Pathogens

Characterization of enteroaggregative Escherichia coli (EAEC) clinical isolates and their antibiotic resistance pattern

(2010) Mohammad Mehdi Aslani et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

EnteroaggregativeEscherichia coli(EAEC) Impairs Growth while Malnutrition Worsens EAEC Infection: A Novel Murine Model of the Infection Malnutrition Cycle

(2010) James K. Roche et al.   JOURNAL OF INFECTIOUS DISEASES

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts

(2010) Toshiro Sato et al.   NATURE

The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions

(2010) M. E. V. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Pic Protease of Enteroaggregative Escherichia coli Promotes Intestinal Colonization and Growth in the Presence of Mucin

(2009) S. M. Harrington et al.   INFECTION AND IMMUNITY

Proteomic Analyses of the Two Mucus Layers of the Colon Barrier Reveal That Their Main Component, the Muc2 Mucin, Is Strongly Bound to the Fcgbp Protein

(2009) Malin E. V. Johansson et al.   JOURNAL OF PROTEOME RESEARCH

Expert Review of the Evidence Base for Prevention of Travelers’ Diarrhea

(2009) Herbert L. DuPont et al.   JOURNAL OF TRAVEL MEDICINE

The structure of a cytolytic α-helical toxin pore reveals its assembly mechanism

(2009) Marcus Mueller et al.   NATURE

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche

(2009) Toshiro Sato et al.   NATURE

The Major Pilin Subunit of the AAF/II Fimbriae from Enteroaggregative Escherichia coli Mediates Binding to Extracellular Matrix Proteins

(2008) M. J. Farfan et al.   INFECTION AND IMMUNITY

Common themes and variations in serine protease autotransporters

(2008) Yihfen T. Yen et al.   TRENDS IN MICROBIOLOGY

Structure and Function of the Cell Surface (Tethered) Mucins

(2007) Christine L. Hattrup et al.   Annual Review of Physiology