Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-08-28
DOI
10.1038/s41467-020-17956-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents
- (2020) Jens Walter et al. CELL
- Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt+ Regulatory T Cells and Exacerbate Colitis in Mice
- (2019) Graham J. Britton et al. IMMUNITY
- Fecal microbiota transplantation before or after allogeneic hematopoietic transplantation in patients with hematological malignancies carrying multidrug-resistance bacteria
- (2019) Giorgia Battipaglia et al. HAEMATOLOGICA
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Increased sulfation of bile acids in mice and human subjects with sodium taurocholate cotransporting polypeptide deficiency
- (2019) Fengfeng Mao et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Multi-omics in IBD biomarker discovery: the missing links
- (2019) Amira Metwaly et al. Nature Reviews Gastroenterology & Hepatology
- MetQy—an R package to query metabolic functions of genes and genomes
- (2018) Andrea S Martinez-Vernon et al. BIOINFORMATICS
- Autologous Haematopoietic Stem Cell Transplantation (AHSCT) in Severe Crohn’s Disease: A Review on Behalf of ECCO and EBMT
- (2018) John A Snowden et al. Journal of Crohns & Colitis
- Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn’s disease
- (2018) Gavin M. Douglas et al. Microbiome
- Differences in Peripheral and Tissue Immune Cell Populations Following Haematopoietic Stem Cell Transplantation in Crohn’s Disease Patients
- (2018) Ana M Corraliza et al. Journal of Crohns & Colitis
- Gut microbiome structure and metabolic activity in inflammatory bowel disease
- (2018) Eric A. Franzosa et al. Nature Microbiology
- Roles for Intestinal Bacteria, Viruses, and Fungi in Pathogenesis of Inflammatory Bowel Diseases and Therapeutic Approaches
- (2017) R. Balfour Sartor et al. GASTROENTEROLOGY
- Guiding longitudinal sampling in IBD cohorts
- (2017) Yoshiki Vázquez-Baeza et al. GUT
- A microbial signature for Crohn's disease
- (2017) Victoria Pascal et al. GUT
- Autologous Haematopoietic Stem Cell Transplantation for Refractory Crohn’s Disease: Efficacy in a Single-Centre Cohort
- (2017) Alicia López-García et al. Journal of Crohns & Colitis
- mixOmics: An R package for ‘omics feature selection and multiple data integration
- (2017) Florian Rohart et al. PLoS Computational Biology
- Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
- (2017) Ilias Lagkouvardos et al. PeerJ
- Transition Metals and Virulence in Bacteria
- (2016) Lauren D. Palmer et al. Annual Review of Genetics
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Improved batch correction in untargeted MS-based metabolomics
- (2016) Ron Wehrens et al. Metabolomics
- IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
- (2016) Ilias Lagkouvardos et al. Scientific Reports
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Improving safety of autologous haematopoietic stem cell transplantation in patients with Crohn's disease
- (2015) Aranzazu Jauregui-Amezaga et al. GUT
- Autologous Hematopoetic Stem Cell Transplantation for Refractory Crohn Disease
- (2015) Christopher J. Hawkey et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses
- (2015) Etienne A. Thévenot et al. JOURNAL OF PROTEOME RESEARCH
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
- (2015) Hiroshi Tsugawa et al. NATURE METHODS
- Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
- (2015) Xochitl C Morgan et al. GENOME BIOLOGY
- Feature Selection with theBorutaPackage
- (2015) Miron B. Kursa et al. Journal of Statistical Software
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Gut Microbiota-Produced Succinate Promotes C. difficile Infection after Antibiotic Treatment or Motility Disturbance
- (2014) Jessica A. Ferreyra et al. Cell Host & Microbe
- The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
- (2014) Dirk Gevers et al. Cell Host & Microbe
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
- (2013) Pelin Yilmaz et al. NUCLEIC ACIDS RESEARCH
- The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis
- (2013) P. M. Smith et al. SCIENCE
- Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
- (2013) V. K. Ridaura et al. SCIENCE
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases
- (2012) Henri Duboc et al. GUT
- Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease
- (2012) Luke Jostins et al. NATURE
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Visualising associations between paired ‘omics’ data sets
- (2012) Ignacio González et al. BioData Mining
- Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification
- (2011) David Berry et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
- (2011) M. Joossens et al. GUT
- Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
- (2011) O.-S. Kim et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Iron replacement therapy in inflammatory bowel disease patients with iron deficiency anemia: A systematic review and meta-analysis
- (2011) Thomas W. Lee et al. Journal of Crohns & Colitis
- Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies
- (2011) Ewa Szymańska et al. Metabolomics
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Depletion of luminal iron alters the gut microbiota and prevents Crohn's disease-like ileitis
- (2010) T. Werner et al. GUT
- Emerging role of hydrogen sulfide in colonic physiology and pathophysiology
- (2010) Mekki Medani et al. INFLAMMATORY BOWEL DISEASES
- E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients
- (2010) N. Barnich et al. PATHOLOGIE BIOLOGIE
- Distinguishing a phosphate ester prodrug from its isobaric sulfate metabolite by mass spectrometry without the metabolite standard
- (2009) Steven T. Wu et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More