Mitochondrial-Y chromosome epistasis in Drosophila melanogaster

The Y chromosome may contribute to sex-specific ageing in Drosophila

(2020) Emily J. Brown et al.   Nature Ecology & Evolution

Partial proteasomal degradation of Lola triggers the male-to-female switch of a dimorphic courtship circuit

(2019) Kosei Sato et al.   Nature Communications

Sterol regulatory element binding protein 1 couples mechanical cues and lipid metabolism

(2019) Rebecca Bertolio et al.   Nature Communications

Sexual conflict through mother’s curse and father’s curse

(2019) J. Arvid Ågren et al.   THEORETICAL POPULATION BIOLOGY

Selfish Mitonuclear Conflict

(2019) Justin C. Havird et al.   CURRENT BIOLOGY

Sex-specific transcriptomic responses to changes in the nutritional environment

(2019) M Florencia Camus et al.   eLife

Linking the mitochondrial genotype to phenotype: a complex endeavour

(2019) Fabrizio Ghiselli et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coadaptation of mitochondrial and nuclear genes, and the cost of mother's curse

(2018) Tim Connallon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Drosophila light-activated TRP and TRPL channels - Targets of the phosphoinositide signaling cascade

(2018) Ben Katz et al.   PROGRESS IN RETINAL AND EYE RESEARCH

Drosophila HNF4 Directs a Switch in Lipid Metabolism that Supports the Transition to Adulthood

(2018) Gilles Storelli et al.   DEVELOPMENTAL CELL

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

Mitochondrial Replacement Therapy: Are Mito-nuclear Interactions Likely To Be a Problem?

(2017) Adam Eyre-Walker   GENETICS

A test for Y-linked additive and epistatic effects on surviving bacterial infections in Drosophila melanogaster

(2017) I. C. Kutch et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

(2017) David P Leader et al.   NUCLEIC ACIDS RESEARCH

Sex-Specific Gene Expression and Life Span Regulation

(2017) John Tower   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Mitochondrial Replacement Therapy: Are Mito-nuclear Interactions Likely To Be a Problem?

(2017) Adam Eyre-Walker   GENETICS

Estrogen related receptor is required for the testicular development and for the normal sperm axoneme/mitochondrial derivatives in Drosophila males

(2017) Snigdha Misra et al.   Scientific Reports

Functional genomics identifies regulators of the phototransduction machinery in the Drosophila larval eye and adult ocelli

(2016) Abhishek Kumar Mishra et al.   DEVELOPMENTAL BIOLOGY

Nuclear-mitochondrial epistasis: a gene's eye view of genomic conflict

(2016) Michael J. Wade et al.   Ecology and Evolution

The Drosophila HNF4 nuclear receptor promotes glucose-stimulated insulin secretion and mitochondrial function in adults

(2016) William E Barry et al.   eLife

A mitochondrial DNA hypomorph of cytochrome oxidase specifically impairs male fertility in Drosophila melanogaster

(2016) Maulik R Patel et al.   eLife

Intergenomic interactions between mitochondrial and Y-linked genes shape male mating patterns and fertility in Drosophila melanogaster

(2015) Winston K.W. Yee et al.   EVOLUTION

The Trojan Female Technique for pest control: a candidate mitochondrial mutation confers low male fertility across diverse nuclear backgrounds inDrosophila melanogaster

(2015) Damian K. Dowling et al.   Evolutionary Applications

The Release 6 reference sequence of theDrosophila melanogastergenome

(2015) Roger A. Hoskins et al.   GENOME RESEARCH

Outside-in signaling - a brief review of GPCR signaling with a focus on the Drosophila GPCR family

(2015) C. D. Hanlon et al.   JOURNAL OF CELL SCIENCE

Context-dependent effects of Y chromosome and mitochondrial haplotype on male locomotive activity inDrosophila melanogaster

(2015) R. Dean et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Mitonuclear Ecology

(2015) Geoffrey E. Hill   MOLECULAR BIOLOGY AND EVOLUTION

Global Diversity Lines–A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains

(2015) Jennifer K. Grenier et al.   G3-Genes Genomes Genetics

Conserved role of Drosophila melanogaster FoxP in motor coordination and courtship song

(2014) Kristy J. Lawton et al.   BEHAVIOURAL BRAIN RESEARCH

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Mito-nuclear interactions as drivers of gene movement on and off the X-chromosome

(2014) Björn Rogell et al.   BMC GENOMICS

Identification of seven genes essential for male fertility through a genome-wide association study of non-obstructive azoospermia and RNA interference-mediated large-scale functional screening in Drosophila

(2014) J. Yu et al.   HUMAN MOLECULAR GENETICS

Distinct Roles of Arrestin 1 Protein in Photoreceptors duringDrosophilaDevelopment

(2014) Bih-Hwa Shieh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Optix defines a neuroepithelial compartment in the optic lobe of the Drosophila brain

(2014) Katrina S Gold et al.   Neural Development

svaseq: removing batch effects and other unwanted noise from sequencing data

(2014) Jeffrey T. Leek   NUCLEIC ACIDS RESEARCH

G×G×E for Lifespan in Drosophila: Mitochondrial, Nuclear, and Dietary Interactions that Modify Longevity

(2014) Chen-Tseh Zhu et al.   PLoS Genetics

Cytonuclear Genomic Interactions and Hybrid Breakdown

(2013) Ronald S. Burton et al.   Annual Review of Ecology Evolution and Systematics

In vivo male fertility is affected by naturally occurring mitochondrial haplotypes

(2013) Winston K.W. Yee et al.   CURRENT BIOLOGY

Characterization, Design, and Function of the Mitochondrial Proteome: From Organs to Organisms

(2013) Christopher Lotz et al.   JOURNAL OF PROTEOME RESEARCH

Mitochondrial Replacement, Evolution, and the Clinic

(2013) K. Reinhardt et al.   SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Mitochondria, Maternal Inheritance, and Male Aging

(2012) M. Florencia Camus et al.   CURRENT BIOLOGY

The Drosophila melanogaster Seminal Fluid Protease “Seminase” Regulates Proteolytic and Post-Mating Reproductive Processes

(2012) Brooke A. LaFlamme et al.   PLoS Genetics

Phospholipid homeostasis regulates lipid metabolism and cardiac function through SREBP signaling in Drosophila

(2011) H.-Y. Lim et al.   GENES & DEVELOPMENT

Cytoplasmic male sterility in Drosophila melanogaster associated with a mitochondrial CYTB variant

(2011) D J Clancy et al.   HEREDITY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Experimental Evidence Supports a Sex-Specific Selective Sieve in Mitochondrial Genome Evolution

(2011) P. Innocenti et al.   SCIENCE

Pph13 and Orthodenticle define a dual regulatory pathway for photoreceptor cell morphogenesis and function

(2010) M. Mishra et al.   DEVELOPMENT

Separable transcriptional regulatory domains within Otd control photoreceptor terminal differentiation events

(2010) Elizabeth C. McDonald et al.   DEVELOPMENTAL BIOLOGY

Distinct functions of Mst77F and protamines in nuclear shaping and chromatin condensation during Drosophila spermiogenesis

(2010) Christina Rathke et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Y Not a Dead End: Epistatic Interactions Between Y- Linked Regulatory Polymorphisms and Genetic Background Affect Global Gene Expression in Drosophila melanogaster

(2010) Pan-Pan Jiang et al.   GENETICS

The Drosophila melanogaster sperm proteome-II (DmSP-II)

(2010) Elizabeth R. Wasbrough et al.   Journal of Proteomics

Epigenetic effects of polymorphic Y chromosomes modulate chromatin components, immune response, and sexual conflict

(2010) B. Lemos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Drosophila HNF4 Regulates Lipid Mobilization and β-Oxidation

(2009) Laura Palanker et al.   Cell Metabolism

Sox100B, a Drosophila Group E Sox-domain Gene, Is Required for Somatic Testis Differentiation

(2009) S. Nanda et al.   Sexual Development

Variation in mitochondrial genotype has substantial lifespan effects which may be modulated by nuclear background

(2008) David J. Clancy   AGING CELL

Polymorphic Y Chromosomes Harbor Cryptic Variation with Manifold Functional Consequences

(2008) B. Lemos et al.   SCIENCE