cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function

ncEP: a manually curated database for experimentally validated ncRNA-encoded proteins or peptides

(2020) Haizhou Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Pervasive functional translation of noncanonical human open reading frames

(2020) Jin Chen et al.   SCIENCE

Comparative proteomic profiling of unannotated microproteins and alternative proteins in human cell lines

(2020) Xiongwen Cao et al.   JOURNAL OF PROTEOME RESEARCH

MNDR v3.0: mammal ncRNA–disease repository with increased coverage and annotation

(2020) Lin Ning et al.   NUCLEIC ACIDS RESEARCH

RIscoper: a tool for RNA-RNA interaction extraction from the literature

(2019) Yang Zhang et al.   BIOINFORMATICS

LINC00116 codes for a mitochondrial peptide linking respiration and lipid metabolism

(2019) Anastasia Chugunova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of NGF Signaling by an Axonal Untranslated mRNA

(2019) Hamish Crerar et al.   NEURON

Coding or Noncoding, the Converging Concepts of RNAs

(2019) Jing Li et al.   Frontiers in Genetics

The Translational Landscape of the Human Heart

(2019) Sebastiaan van Heesch et al.   CELL

A hidden human proteome encoded by ‘non-coding’ genes

(2019) Shaohua Lu et al.   NUCLEIC ACIDS RESEARCH

Exploration of invasive mechanisms via global ncRNA-associated virus-host crosstalk

(2019) Tian-yuan Liu et al.   GENOMICS

The small peptide world in long noncoding RNAs

(2018) Seo-Won Choi et al.   BRIEFINGS IN BIOINFORMATICS

Coding and Non-coding RNAs, the Frontier Has Never Been So Blurred

(2018) Florent Hubé et al.   Frontiers in Genetics

OMIM.org: leveraging knowledge across phenotype–gene relationships

(2018) Joanna S Amberger et al.   NUCLEIC ACIDS RESEARCH

RNAcentral: a hub of information for non-coding RNA sequences

(2018) et al.   NUCLEIC ACIDS RESEARCH

RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling

(2018) Hongwei Wang et al.   NUCLEIC ACIDS RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Peptides/Proteins Encoded by Non-coding RNA: A Novel Resource Bank for Drug Targets and Biomarkers

(2018) Song Zhu et al.   Frontiers in Pharmacology

Translation of CircRNAs

(2017) Nagarjuna Reddy Pamudurti et al.   MOLECULAR CELL

An atlas of human long non-coding RNAs with accurate 5′ ends

(2017) Chung-Chau Hon et al.   NATURE

An update on sORFs.org: a repository of small ORFs identified by ribosome profiling

(2017) Volodimir Olexiouk et al.   NUCLEIC ACIDS RESEARCH

TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data

(2017) Wanting Liu et al.   NUCLEIC ACIDS RESEARCH

CncRNAs: RNAs with both coding and non-coding roles in development

(2016) Karuna Sampath et al.   DEVELOPMENT

Dual-function small regulatory RNAs in bacteria

(2016) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide

(2016) Akinobu Matsumoto et al.   NATURE

circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations

(2016) Xiaoping Chen et al.   Scientific Reports

Primary transcripts of microRNAs encode regulatory peptides

(2015) Dominique Lauressergues et al.   NATURE

Discovery and characterization of smORF-encoded bioactive polypeptides

(2015) Alan Saghatelian et al.   Nature Chemical Biology

cncRNAs: Bi-functional RNAs with protein coding and non-coding functions

(2015) Pooja Kumari et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Mass-spectrometry-based draft of the human proteome

(2014) Mathias Wilhelm et al.   NATURE

Emerging evidence for functional peptides encoded by short open reading frames

(2014) Shea J. Andrews et al.   NATURE REVIEWS GENETICS

ViRBase: a resource for virus–host ncRNA-associated interactions

(2014) Yanhui Li et al.   NUCLEIC ACIDS RESEARCH

Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes

(2014) Nicholas T. Ingolia et al.   Cell Reports

Regulatory Roles for Long ncRNA and mRNA

(2013) Armen Karapetyan et al.   Cancers

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Binary function of mRNA

(2011) Malgorzata Kloc et al.   BIOCHIMIE

The evolution of RNAs with multiple functions

(2011) Marcel E. Dinger et al.   BIOCHIMIE

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

(2011) Yvonne Tay et al.   CELL

The p53 mRNA-Mdm2 interaction

(2011) Nadia Naski et al.   CELL CYCLE

Nucleation of nuclear bodies by RNA

(2011) Sergey P. Shevtsov et al.   NATURE CELL BIOLOGY

tRNA: Vast reservoir of RNA molecules with unexpected regulatory function

(2011) R. Geslain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

When one is better than two: RNA with dual functions

(2010) Damien Ulveling et al.   BIOCHIMIE

p53 mRNA controls p53 activity by managing Mdm2 functions

(2008) Marco M. Candeias et al.   NATURE CELL BIOLOGY