TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data

Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing

(2017) Zhibiao Mai et al.   Scientific Reports

Bacteria differently regulate mRNA abundance to specifically respond to various stresses

(2016) Alexander Bartholomäus et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Genome-Wide and Experimental Resolution of Relative Translation Elongation Speed at Individual Gene Level in Human Cells

(2016) Xinlei Lian et al.   PLoS Genetics

Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq

(2015) Anto P. Rajkumar et al.   BMC GENOMICS

Recent Advances in the Chromosome-Centric Human Proteome Project: Missing Proteins in the Spot Light

(2015) Young-Ki Paik et al.   JOURNAL OF PROTEOME RESEARCH

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

(2015) Péter Horvatovich et al.   JOURNAL OF PROTEOME RESEARCH

RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling

(2015) Shang-Qian Xie et al.   NUCLEIC ACIDS RESEARCH

Iterative Genome Correction Largely Improves Proteomic Analysis of Nonmodel Organisms

(2014) Xiaohui Wu et al.   JOURNAL OF PROTEOME RESEARCH

FANSe2: A Robust and Cost-Efficient Alignment Tool for Quantitative Next-Generation Sequencing Applications

(2014) Chuan-Le Xiao et al.   PLoS One

How to discover new proteins—translatome profiling

(2014) Gong Zhang et al.   Science China-Life Sciences

Chromosome-8-Coded Proteome of Chinese Chromosome Proteome Data Set (CCPD) 2.0 with Partial Immunohistochemical Verifications

(2013) Yang Liu et al.   JOURNAL OF PROTEOME RESEARCH

Systematic Analysis of Missing Proteins Provides Clues to Help Define All of the Protein-Coding Genes on Human Chromosome 1

(2013) Chengpu Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Resolving Chromosome-Centric Human Proteome with Translating mRNA Analysis: A Strategic Demonstration

(2013) Jiayong Zhong et al.   JOURNAL OF PROTEOME RESEARCH

Systematic Analyses of the Transcriptome, Translatome, and Proteome Provide a Global View and Potential Strategy for the C-HPP

(2013) Cheng Chang et al.   JOURNAL OF PROTEOME RESEARCH

Metrics for the Human Proteome Project 2013–2014 and Strategies for Finding Missing Proteins

(2013) Lydie Lane et al.   JOURNAL OF PROTEOME RESEARCH

Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific

(2013) Tong Wang et al.   NUCLEIC ACIDS RESEARCH

GWIPS-viz: development of a ribo-seq genome browser

(2013) Audrey M. Michel et al.   NUCLEIC ACIDS RESEARCH

TISdb: a database for alternative translation initiation in mammalian cells

(2013) Ji Wan et al.   NUCLEIC ACIDS RESEARCH

FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads

(2012) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

Toward a Genome-Wide Landscape of Translational Control

(2012) O. Larsson et al.   Cold Spring Harbor Perspectives in Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

(2009) Joshua S Bloom et al.   BMC GENOMICS

Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets

(2009) Nahum Sonenberg et al.   CELL

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS