RNA-seq based transcriptomic analysis of single bacterial cells

Validation of noise models for single-cell transcriptomics

(2014) Dominic Grün et al.   NATURE METHODS

Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types

(2014) D. A. Jaitin et al.   SCIENCE

Monitoring the Single-Cell Stress Response of the Diatom Thalassiosira pseudonana by Quantitative Real-Time Reverse Transcription-PCR

(2013) Xu Shi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization

(2013) Shintaro Katayama et al.   BIOINFORMATICS

Single cell transcriptomic analysis of prostate cancer cells

(2013) Christopher J Welty et al.   BMC MOLECULAR BIOLOGY

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Quantitative single-cell RNA-seq with unique molecular identifiers

(2013) Saiful Islam et al.   NATURE METHODS

Single-Cell Analysis Reveals Early Manifestation of Cancerous Phenotype in Pre-Malignant Esophageal Cells

(2013) Jiangxin Wang et al.   PLoS One

Single cell analysis of gene expression patterns during carbon starvation inBacillus subtilisreveals large phenotypic variation

(2012) Imke G. de Jong et al.   ENVIRONMENTAL MICROBIOLOGY

Transposon-Mediated Adaptive and Directed Mutations and Their Potential Evolutionary Benefits

(2012) Zhongge Zhang et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome sequencing of single cells with Smart-Seq

(2012) Jillian J Goetz et al.   NATURE BIOTECHNOLOGY

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Transposon integration enhances expression of stress response genes

(2012) Gang Feng et al.   NUCLEIC ACIDS RESEARCH

Quantitative single-cell gene expression measurements of multiple genes in response to hypoxia treatment

(2011) Jia Zeng et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Progress in prokaryotic transcriptomics

(2011) Melanie J Filiatrault   CURRENT OPINION IN MICROBIOLOGY

Transcript amplification from single bacterium for transcriptome analysis

(2011) Y. Kang et al.   GENOME RESEARCH

RT-qPCR based quantitative analysis of gene expression in single bacterial cells

(2011) Weimin Gao et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Single cell transcriptomics of neighboring hyphae of Aspergillus niger

(2011) Charissa de Bekker et al.   GENOME BIOLOGY

Chemical and biological single cell analysis

(2010) Andreas Schmid et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators

(2010) Shen Lin et al.   GENE

Heterochronic Phosphorelay Gene Expression as a Source of Heterogeneity in Bacillus subtilis Spore Formation

(2010) I. G. de Jong et al.   JOURNAL OF BACTERIOLOGY

Single cell analysis: the new frontier in ‘omics’

(2010) Daojing Wang et al.   TRENDS IN BIOTECHNOLOGY

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Use of high throughput sequencing to observe genome dynamics at a single cell level

(2009) D. Parkhomchuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New tools for discovering and characterizing microbial diversity

(2008) Erick Cardenas et al.   CURRENT OPINION IN BIOTECHNOLOGY

Physiological heterogeneity in biofilms

(2008) Philip S. Stewart et al.   NATURE REVIEWS MICROBIOLOGY