Integrating omics to unravel the stress-response mechanisms in probiotic bacteria: Approaches, challenges, and prospects

Metabolomic and proteomic responses of Staphylococcus aureus to prolonged cold stress

(2015) Mousa M. Alreshidi et al.   Journal of Proteomics

Metabolomic analysis reveals functional overlapping of three signal transduction proteins in regulating ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803

(2015) Ye Zhu et al.   Molecular BioSystems

Omics for the study of probiotic microorganisms

(2013) Borja Sánchez et al.   FOOD RESEARCH INTERNATIONAL

Metabolomic Analysis of Cold Acclimation of Arctic Mesorhizobium sp. Strain N33

(2013) Abdollah Ghobakhlou et al.   PLoS One

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

(2013) Bork A. Berghoff et al.   PLoS Genetics

Global Metabolomic Responses of Escherichia coli to Heat Stress

(2012) Yangfang Ye et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic and transcriptomic analysis of the response to bile stress of Lactobacillus casei BL23

(2012) C. Alcantara et al.   MICROBIOLOGY-SGM

Comparative proteomic analysis of Lactobacillus plantarum for the identification of key proteins in bile tolerance

(2011) Erwann Hamon et al.   BMC MICROBIOLOGY

Proteomic analysis of responses of a new probiotic bacterium Lactobacillus casei Zhang to low acid stress

(2011) Rina Wu et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

(2011) Johanna Koponen et al.   Journal of Proteomics

Oxidative stress-related responses of Bifidobacterium longum subsp. longum BBMN68 at the proteomic level after exposure to oxygen

(2011) M. Xiao et al.   MICROBIOLOGY-SGM

A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation

(2011) Manuel Liebeke et al.   Molecular BioSystems

Small colony variants of Staphylococcus aureus reveal distinct protein profiles

(2011) André Kriegeskorte et al.   PROTEOMICS

Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor

(2010) S. Kol et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of transient acid stress on the proteome of intestinal probiotic Lactobacillus reuteri

(2010) KiBeom Lee et al.   BIOCHEMISTRY-MOSCOW

Effect of bile salts stress on protein synthesis of Lactobacillus casei Zhang revealed by 2-dimensional gel electrophoresis

(2010) R. Wu et al.   JOURNAL OF DAIRY SCIENCE

Proteomics and Transcriptomics Characterization of Bile Stress Response in ProbioticLactobacillus rhamnosusGG

(2010) Kerttu Koskenniemi et al.   MOLECULAR & CELLULAR PROTEOMICS

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

A proteomic view of cell physiology and virulence of Staphylococcus aureus

(2009) Michael Hecker et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

Genomic and Genetic Characterization of the Bile Stress Response of Probiotic Lactobacillus reuteri ATCC 55730

(2008) K. Whitehead et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development and Experimental Validation of a Predictive Threshold Cycle Equation for Quantification of Virulence and Marker Genes by High-Throughput Nanoliter-Volume PCR on the OpenArray Platform

(2008) R. D. Stedtfeld et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolomic Investigation of the Bacterial Response to a Metal Challenge

(2008) V. Tremaroli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Statistical Application and Challenges in Global Gel-Free Proteomic Analysis by Mass Spectrometry

(2008) Lei Nie et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Proteomic analysis of the effect of bile salts on the intestinal and probiotic bacterium Lactobacillus reuteri

(2008) KiBeom Lee et al.   JOURNAL OF BIOTECHNOLOGY

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

(2008) Jack A. Gilbert et al.   PLoS One

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA