Relatives of rubella virus in diverse mammals

Phylogeny matters: revisiting ‘a comparison of bats and rodents as reservoirs of zoonotic viruses’

(2019) Cylita Guy et al.   Royal Society Open Science

Accelerating measles and rubella elimination through research and innovation – Findings from the Measles & Rubella Initiative research prioritization process, 2016

(2019) Gavin B. Grant et al.   VACCINE

Highly efficient library preparation for Ion Torrent sequencing using Y-adapters

(2019) Leonie F Forth et al.   BIOTECHNIQUES

First evidence of hepatitis E virus infection in a small mammal (yellow-necked mouse) from Croatia

(2019) Jelena Prpić et al.   PLoS One

Infectious vaccine-derived rubella viruses emerge, persist, and evolve in cutaneous granulomas of children with primary immunodeficiencies

(2019) Ludmila Perelygina et al.   PLoS Pathogens

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection

(2018) Claudia Wylezich et al.   Scientific Reports

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Association of Ocular Inflammation and Rubella Virus Persistence

(2018) John A. Gonzales et al.   JAMA Ophthalmology

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Transitioning Lessons Learned and Assets of the Global Polio Eradication Initiative to Global and Regional Measles and Rubella Elimination

(2017) Katrina Kretsinger et al.   JOURNAL OF INFECTIOUS DISEASES

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Host and viral traits predict zoonotic spillover from mammals

(2017) Kevin J. Olival et al.   NATURE

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis

(2017) Guoyan Zhao et al.   VIROLOGY

Progress in Rubella and Congenital Rubella Syndrome Control and Elimination — Worldwide, 2000–2016

(2017) Gavin B. Grant et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets

(2015) Matthias Scheuch et al.   BMC BIOINFORMATICS

Rubella

(2015) Nathaniel Lambert et al.   LANCET

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

NGL Viewer: a web application for molecular visualization

(2015) Alexander S. Rose et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic analysis of rubella viruses identified in Uganda, 2003-2012

(2014) Prossy Namuwulya et al.   JOURNAL OF MEDICAL VIROLOGY

How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats

(2014) Nicole M. Foley et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Functional and evolutionary insight from the crystal structure of rubella virus protein E1

(2013) Rebecca M. DuBois et al.   NATURE

High diversity of West African bat malaria parasites and a tight link with rodent Plasmodium taxa

(2013) J. Schaer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009

(2013) Emily Abernathy et al.   Virology Journal

Complex evolution and epidemiology of Dobrava-Belgrade hantavirus: definition of genotypes and their characteristics

(2012) Boris Klempa et al.   ARCHIVES OF VIROLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Molecular Identification of Small Mammal Species Using Novel Cytochrome b Gene-Derived Degenerated Primers

(2011) Mathias Schlegel et al.   BIOCHEMICAL GENETICS

Integrating biodiversity distribution knowledge: toward a global map of life

(2011) Walter Jetz et al.   TRENDS IN ECOLOGY & EVOLUTION

Toward the estimation of the absolute quality of individual protein structure models

(2010) Pascal Benkert et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Network “Rodent-borne pathogens” in Germany: longitudinal studies on the geographical distribution and prevalence of hantavirus infections

(2008) R. G. Ulrich et al.   PARASITOLOGY RESEARCH