Giant African snail genomes provide insights into molluscan whole‐genome duplication and aquatic–terrestrial transition

Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects

(2019) Yoichiro Nakatani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Multiple large-scale gene and genome duplications during the evolution of hexapods

(2018) Zheng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-Genome Duplication and Plant Macroevolution

(2018) James W. Clark et al.   TRENDS IN PLANT SCIENCE

Polyploidy as a mechanism for surviving global change

(2018) Emily B. Sessa   NEW PHYTOLOGIST

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

The evolutionary significance of polyploidy

(2017) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Whole genome analysis of a schistosomiasis-transmitting freshwater snail

(2017) Coen M. Adema et al.   Nature Communications

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

(2017) Marcela Uliano-Silva et al.   GigaScience

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization

(2017) Xiaodong Du et al.   GigaScience

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

Direct Evidence for Metabolon Formation and Substrate Channeling in Recombinant TCA Cycle Enzymes

(2016) Beyza Bulutoglu et al.   ACS Chemical Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the Ellobiidae (Gastropoda: Panpulmonata) supports independent terrestrial invasions

(2016) Pedro E. Romero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Neurotoxicity of Ammonia

(2016) Simo S. Oja et al.   NEUROCHEMICAL RESEARCH

The Planorbid Snail Biomphalaria glabrata Expresses a Hemocyanin-Like Sequence in the Albumen Gland

(2016) Janeth J. Peña et al.   PLoS One

End-Cretaceous extinction in Antarctica linked to both Deccan volcanism and meteorite impact via climate change

(2016) Sierra V. Petersen et al.   Nature Communications

The Lungfish Transcriptome: A Glimpse into Molecular Evolution Events at the Transition from Water to Land

(2016) Maria Assunta Biscotti et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Immune and stress responses in oysters with insights on adaptation

(2015) Ximing Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

(2015) N J Kenny et al.   HEREDITY

The Study of Carbamoyl Phosphate Synthetase 1 Deficiency Sheds Light on the Mechanism for Switching On/Off the Urea Cycle

(2015) Carmen Díez-Fernández et al.   Journal of Genetics and Genomics

Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species

(2015) Jessica Stapley et al.   MOLECULAR ECOLOGY

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary

(2014) Kevin Vanneste et al.   GENOME RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda

(2014) F. Zapata et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of molluscan hemocyanin structures

(2013) Jürgen Markl   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Polyploidy in Animals: Effects of Gene Expression on Sex Determination, Evolution and Ecology

(2013) B. Wertheim et al.   CYTOGENETIC AND GENOME RESEARCH

Vertebrate Land Invasions-Past, Present, and Future: An Introduction to the Symposium

(2013) M. A. Ashley-Ross et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Evidence for Specific Genotype-Dependent Immune Priming in the LophotrochozoanBiomphalaria glabrataSnail

(2013) Julien Portela et al.   Journal of Innate Immunity

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

Terrestrial invasion of pomatiopsid gastropods in the heavy-snow region of the Japanese Archipelago

(2011) Yuichi Kameda et al.   BMC EVOLUTIONARY BIOLOGY

Gravity and the evolution of cardiopulmonary morphology in snakes

(2011) Harvey B. Lillywhite et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

The Trade in Medicinal Animals in Northeastern Brazil

(2011) Felipe Silva Ferreira et al.   Evidence-based Complementary and Alternative Medicine

Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca

(2011) Nathaniel M. Hallinan et al.   Genome Biology and Evolution

Genome duplication in amphibians and fish: an extended synthesis

(2011) B. K. Mable et al.   JOURNAL OF ZOOLOGY

Selfish genetic elements, genetic conflict, and evolutionary innovation

(2011) J. H. Werren   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the origin of Acochlidia and other enigmatic euthyneuran gastropods, with implications for the systematics of Heterobranchia

(2010) Katharina M Jörger et al.   BMC EVOLUTIONARY BIOLOGY

ABCG2 reduces ROS-mediated toxicity and inflammation: a potential role in Alzheimer’s disease

(2010) Shanshan Shen et al.   JOURNAL OF NEUROCHEMISTRY

Causes and effects of a highly successful marine invasion: Case-study of the introduced Pacific oyster Crassostrea gigas in continental NW European estuaries

(2010) Karin Troost   JOURNAL OF SEA RESEARCH

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Polyploidy and angiosperm diversification

(2009) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Alien Non-Marine Snails and Slugs of Priority Quarantine Importance in the United States: A Preliminary Risk Assessment

(2009) Robert H. Cowie et al.   AMERICAN MALACOLOGICAL BULLETIN

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

(2009) J. A. Fawcett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Zinc in gastrointestinal and liver disease

(2007) Gavino Faa et al.   COORDINATION CHEMISTRY REVIEWS