The Influence of Environmental Variation on the Genetic Structure of a Poison Frog Distributed Across Continuous Amazonian Rainforest

Evolutionary principles guiding amphibian conservation

(2020) Maciej Pabijan et al.   Evolutionary Applications

Complex patterns of differentiation and gene flow underly the divergence of aposematic phenotypes in Oophaga poison frogs

(2020) Jana Ebersbach et al.   MOLECULAR ECOLOGY

Relative importance of isolation‐by‐environment and other determinants of gene flow in an alpine amphibian

(2020) Josh Van Buskirk et al.   EVOLUTION

Evaluation of model fit of inferred admixture proportions

(2020) Genís Garcia‐Erill et al.   Molecular Ecology Resources

Quaternary climate changes as speciation drivers in the Amazon floodplains

(2020) Gregory Thom et al.   Science Advances

The influence of a priori grouping on inference of genetic clusters: simulation study and literature review of the DAPC method

(2020) Joshua M. Miller et al.   HEREDITY

Chronology of Terra Firme formation in Amazonian lowlands reveals a dynamic Quaternary landscape

(2019) F.N. Pupim et al.   QUATERNARY SCIENCE REVIEWS

Admixture between ancient lineages, selection, and the formation of sympatric stickleback species-pairs

(2019) Laura L Dean et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of polymorphism in the warning coloration of the Amazonian poison frog Adelphobates galactonotus

(2019) Diana Rojas et al.   HEREDITY

Social Barriers in Ecological Landscapes: The Social Resistance Hypothesis

(2019) Nicolette C. Armansin et al.   TRENDS IN ECOLOGY & EVOLUTION

Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback

(2019) David A. Marques et al.   Nature Communications

Spatial and environmental correlates of intraspecific morphological variation in three species of passerine birds from the Purus–Madeira interfluvium, Central Amazonia

(2018) Fernando Henrique Teófilo de Abreu et al.   EVOLUTIONARY ECOLOGY

Environmental transition zone and rivers shape intraspecific population structure and genetic diversity of an Amazonian rain forest tree frog

(2018) Diego A. Ortiz et al.   EVOLUTIONARY ECOLOGY

Biogeography and diversification of Rhegmatorhina (Aves: Thamnophilidae): Implications for the evolution of Amazonian landscapes during the Quaternary

(2018) Camila C. Ribas et al.   JOURNAL OF BIOGEOGRAPHY

The search for loci under selection: trends, biases and progress

(2018) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

ResistanceGA : An R package for the optimization of resistance surfaces using genetic algorithms

(2018) William E. Peterman   Methods in Ecology and Evolution

Soil and forest structure predicts large-scale patterns of occurrence and local abundance of a widespread Amazonian frog

(2018) Anthony S. Ferreira et al.   PeerJ

Conspicuousness, color resemblance, and toxicity in geographically diverging mimicry: The pan-Amazonian frogAllobates femoralis

(2017) Adolfo Amézquita et al.   EVOLUTION

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Wide but not impermeable: Testing the riverine barrier hypothesis for an Amazonian plant species

(2017) Alison G. Nazareno et al.   MOLECULAR ECOLOGY

Developing approaches for linear mixed modeling in landscape genetics through landscape-directed dispersal simulations

(2017) Jeffrey R. Row et al.   Ecology and Evolution

Phylogenetic Systematics of Dart-Poison Frogs and Their Relatives Revisited (Anura: Dendrobatoidea)

(2017) Taran Grant et al.   South American Journal of Herpetology

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

The significance of spatial memory for water finding in a tadpole-transporting frog

(2016) Andrius Pašukonis et al.   ANIMAL BEHAVIOUR

Forest structure along a 600 km transect of natural disturbances and seasonality gradients in central-southern Amazonia

(2016) Juliana Schietti et al.   JOURNAL OF ECOLOGY

Dealing with uncertainty in landscape genetic resistance models: a case of three co-occurring marsupials

(2016) Rachael Y. Dudaniec et al.   MOLECULAR ECOLOGY

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus )

(2016) Laura Benestan et al.   MOLECULAR ECOLOGY

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Populations, pools, and peccaries: simulating the impact of ecosystem engineers on rainforest frogs

(2015) M. Ringler et al.   BEHAVIORAL ECOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Genetic evidence for ecological divergence in kokanee salmon

(2015) Matthew A. Lemay et al.   MOLECULAR ECOLOGY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Landscape genetics in a changing world: disentangling historical and contemporary influences and inferring change

(2015) Clinton W. Epps et al.   MOLECULAR ECOLOGY

Whole-genome sequence of the Tibetan frogNanorana parkeriand the comparative evolution of tetrapod genomes

(2015) Yan-Bo Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Ecological speciation in the tropics: insights from comparative genetic studies in Amazonia

(2015) Luciano B. Beheregaray et al.   Frontiers in Genetics

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Köppen's climate classification map for Brazil

(2014) Clayton Alcarde Alvares et al.   METEOROLOGISCHE ZEITSCHRIFT

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology

(2013) Aaron B. A. Shafer et al.   ECOLOGY LETTERS

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Tadpole transport logistics in a Neotropical poison frog: indications for strategic planning and adaptive plasticity in anuran parental care

(2013) Eva Ringler et al.   Frontiers in Zoology

Using multilevel models to identify drivers of landscape-genetic structure among management areas

(2013) Rachael Y. Dudaniec et al.   MOLECULAR ECOLOGY

Revisiting Amazonian phylogeography: insights into diversification hypotheses and novel perspectives

(2013) Rafael N. Leite et al.   ORGANISMS DIVERSITY & EVOLUTION

Late Pleistocene glacial forest of Humaitá—Western Amazonia

(2013) M.C.L. Cohen et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Hybridization promotes color polymorphism in the aposematic harlequin poison frog,Oophaga histrionica

(2013) Iliana Medina et al.   Ecology and Evolution

The Role of Physical Barriers in the Location of Avian Suture Zones in the Guiana Shield, Northern Amazonia

(2012) Luciano Nicolas Naka et al.   AMERICAN NATURALIST

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Temporal Patterns of Reproductive Activity and Site Attachment of the Brilliant-Thighed FrogAllobates femoralisfrom Central Amazonia

(2012) Igor L. Kaefer et al.   JOURNAL OF HERPETOLOGY

Circuit Theory and Model-Based Inference for Landscape Connectivity

(2012) Ephraim M. Hanks et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new analytical approach to landscape genetic modelling: least-cost transect analysis and linear mixed models

(2012) MAARTEN J. VAN STRIEN et al.   MOLECULAR ECOLOGY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Courtship and mating behaviour of the brilliant-thighed frogAllobates femoralisfrom Central Amazonia: implications for the study of a species complex

(2011) A. Montanarin et al.   ETHOLOGY ECOLOGY & EVOLUTION

Strong male/male competition allows for nonchoosy females: high levels of polygynandry in a territorial frog with paternal care

(2011) EVA URSPRUNG et al.   MOLECULAR ECOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The Late Miocene paleogeography of the Amazon Basin and the evolution of the Amazon River system

(2010) Edgardo M. Latrubesse et al.   EARTH-SCIENCE REVIEWS

Inferring landscape effects on gene flow: a new model selection framework

(2010) A. J. SHIRK et al.   MOLECULAR ECOLOGY

Considering spatial and temporal scale in landscape-genetic studies of gene flow

(2010) COREY DEVIN ANDERSON et al.   MOLECULAR ECOLOGY

Landscape genetics: where are we now?

(2010) ANDREW STORFER et al.   MOLECULAR ECOLOGY

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Site fidelity and patterns of short- and long-term movement in the brilliant-thighed poison frog Allobates femoralis (Aromobatidae)

(2009) Max Ringler et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Calls, colours, shape, and genes: a multi-trait approach to the study of geographic variation in the Amazonian frog Allobates femoralis

(2009) ADOLFO AMÉZQUITA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?

(2009) A. C. Frantz et al.   JOURNAL OF APPLIED ECOLOGY

Amazonian Amphibian Diversity Is Primarily Derived from Late Miocene Andean Lineages

(2009) Juan C Santos et al.   PLOS BIOLOGY

USING CIRCUIT THEORY TO MODEL CONNECTIVITY IN ECOLOGY, EVOLUTION, AND CONSERVATION

(2008) Brad H. McRae et al.   ECOLOGY

GENETIC DISTANCE BETWEEN SPECIES PREDICTS NOVEL TRAIT EXPRESSION IN THEIR HYBRIDS

(2008) Rike Stelkens et al.   EVOLUTION

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Model selection and information theory in geographical ecology

(2008) José Alexandre Felizola Diniz-Filho et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Amphibian phylogeography: a model for understanding historical aspects of species distributions

(2008) I Zeisset et al.   HEREDITY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH