Complex patterns of differentiation and gene flow underly the divergence of aposematic phenotypes in Oophaga poison frogs

The Chinese giant salamander exemplifies the hidden extinction of cryptic species

(2018) Fang Yan et al.   CURRENT BIOLOGY

Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral

(2018) Mikhail V. Matz et al.   PLoS Genetics

Adaptive introgression and maintenance of a trispecies hybrid complex in range-edge populations of Populus

(2018) Vikram E. Chhatre et al.   MOLECULAR ECOLOGY

Multivariate species boundaries and conservation of harlequin poison frogs

(2018) Andrés Posso-Terranova et al.   MOLECULAR ECOLOGY

Genomic evidence of hybridization between two independent invasions of European green crab (Carcinus maenas) in the Northwest Atlantic

(2017) N W Jeffery et al.   HEREDITY

Widespread hybridization and bidirectional introgression in sympatric species of coral reef fish

(2017) Hugo B. Harrison et al.   MOLECULAR ECOLOGY

Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection

(2017) Daniel M. Portik et al.   MOLECULAR ECOLOGY

hybriddetective : A workflow and package to facilitate the detection of hybridization using genomic data in r

(2017) Brendan F. Wringe et al.   Molecular Ecology Resources

Rapid hybrid speciation in Darwin’s finches

(2017) Sangeet Lamichhaney et al.   SCIENCE

Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes

(2017) Drew R. Schield et al.   Ecology and Evolution

Radiation of the polymorphic Little Devil poison frog (Oophaga sylvatica ) in Ecuador

(2017) Alexandre B. Roland et al.   Ecology and Evolution

The global amphibian trade flows through Europe: the need for enforcing and improving legislation

(2016) Mark Auliya et al.   BIODIVERSITY AND CONSERVATION

Behavioural, ecological, and evolutionary aspects of diversity in frog colour patterns

(2016) Bibiana Rojas   BIOLOGICAL REVIEWS

Hybridization and extinction

(2016) Marco Todesco et al.   Evolutionary Applications

Complex niche divergence underlies lineage diversification inOophagapoison frogs

(2016) Andrés Posso-Terranova et al.   JOURNAL OF BIOGEOGRAPHY

Strong reproductive isolation and narrow genomic tracts of differentiation among three woodpecker species in secondary contact

(2016) Christine Grossen et al.   MOLECULAR ECOLOGY

genepopedit: a simple and flexible tool for manipulating multilocus molecular data in R

(2016) Ryan R. E. Stanley et al.   Molecular Ecology Resources

Natural and Anthropogenic Hybridization in Two Species of Eastern Brazilian Marmosets (Callithrix jacchus and C. penicillata)

(2015) Joanna Malukiewicz et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone

(2014) Scott A. Taylor et al.   EVOLUTION

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Human disturbance causes the formation of a hybrid swarm between two naturally sympatric fish species

(2014) Daniel J. Hasselman et al.   MOLECULAR ECOLOGY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Review of the Frog GenusSilverstoneia, with Descriptions of Five New Species from the Colombian Chocó (Dendrobatidae: Colostethinae)

(2013) Taran Grant et al.   AMERICAN MUSEUM NOVITATES

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Phenotypic and Genetic Divergence among Poison Frog Populations in a Mimetic Radiation

(2013) Evan Twomey et al.   PLoS One

Hybridization promotes color polymorphism in the aposematic harlequin poison frog,Oophaga histrionica

(2013) Iliana Medina et al.   Ecology and Evolution

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Do highly divergent loci reside in genomic regions affecting reproductive isolation? A test using next-generation sequence data in Timema stick insects

(2012) Patrik Nosil et al.   BMC EVOLUTIONARY BIOLOGY

Divergent evolution in the polymorphic granular poison-dart frog,Oophaga granulifera: genetics, coloration, advertisement calls and morphology

(2012) Oscar Brusa et al.   JOURNAL OF BIOGEOGRAPHY

bgc: Software for Bayesian estimation of genomic clines

(2012) Z. Gompert et al.   Molecular Ecology Resources

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Bayesian estimation of genomic clines

(2011) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Evidence for selection on coloration in a Panamanian poison frog: a coalescent-based approach

(2010) Jason L. Brown et al.   JOURNAL OF BIOGEOGRAPHY

SEXUAL SELECTION CAN INCREASE THE EFFECT OF RANDOM GENETIC DRIFT-A QUANTITATIVE GENETIC MODEL OF POLYMORPHISM IN OOPHAGA PUMILIO, THE STRAWBERRY POISON-DART FROG

(2009) Samuel J. Tazzyman et al.   EVOLUTION

A powerful regression-based method for admixture mapping of isolation across the genome of hybrids

(2009) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY

introgress: a software package for mapping components of isolation in hybrids

(2009) ZACHARIAH GOMPERT et al.   Molecular Ecology Resources

Invasive hybrid tiger salamander genotypes impact native amphibians

(2009) M. E. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

RAPID COLOR EVOLUTION IN AN APOSEMATIC SPECIES: A PHYLOGENETIC ANALYSIS OF COLOR VARIATION IN THE STRIKINGLY POLYMORPHIC STRAWBERRY POISON-DART FROG

(2008) Ian J. Wang et al.   EVOLUTION

Reproductive isolation among two interfertile Rhododendron species: low frequency of post-F1 hybrid genotypes in alpine hybrid zones

(2008) RICHARD I. MILNE et al.   MOLECULAR ECOLOGY

Homoploid hybrid speciation in animals

(2008) JESÚS MAVÁREZ et al.   MOLECULAR ECOLOGY