Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement

Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea

(2020) Pallavi Sinha et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice

(2020) Kun Wu et al.   SCIENCE

Histone Deacetylase HDA9 With ABI4 Contributes to Abscisic Acid Homeostasis in Drought Stress Response

(2020) Dongwon Baek et al.   Frontiers in Plant Science

Epigenetics: possible applications in climate-smart crop breeding

(2020) Serena Varotto et al.   JOURNAL OF EXPERIMENTAL BOTANY

Current research frontiers in plant epigenetics: an introduction to a Virtual Issue

(2020) Mimmi C. Eriksson et al.   NEW PHYTOLOGIST

Occurrence of the potent mutagens 2- nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles

(2019) Aldenor G. Santos et al.   Scientific Reports

Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

(2019) Ashot Papikian et al.   Nature Communications

Arabidopsis histone H3K4 demethylase JMJ 17 functions in dehydration stress response

(2019) Shuangzhan Huang et al.   NEW PHYTOLOGIST

Primed histone demethylation regulates shoot regenerative competency

(2019) Hiroya Ishihara et al.   Nature Communications

Brachypodium histone deacetylase BdHD1 positively regulates ABA and drought stress responses

(2019) Jingpu Song et al.   PLANT SCIENCE

Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation

(2019) Jered M Wendte et al.   eLife

Identification of the expressome by machine learning on omics data

(2019) Ryan C. Sartor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone modifications form epigenetic regulatory networks to regulate abiotic stress response

(2019) Minoru Ueda et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of the Hierarchical Response of Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity Stress

(2019) Minoru Ueda et al.   Frontiers in Plant Science

Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing byHISTONE DEACETYLASE 108

(2018) Cristian Forestan et al.   GENETICS

Understanding the evolutionary potential of epigenetic variation: a comparison of heritable phenotypic variation in epiRILs, RILs, and natural ecotypes of Arabidopsis thaliana

(2018) Yuan-Ye Zhang et al.   HEREDITY

An epigenetic breeding system in soybean for increased yield and stability

(2018) Sunil K. Kenchanmane Raju et al.   PLANT BIOTECHNOLOGY JOURNAL

Zebularine treatment is associated with deletion of FT -B1 leading to an increase in spikelet number in bread wheat

(2018) E. Jean Finnegan et al.   PLANT CELL AND ENVIRONMENT

Maintenance of pre-existing DNA methylation states through recurring excess-light stress

(2018) Diep R. Ganguly et al.   PLANT CELL AND ENVIRONMENT

Targeted DNA demethylation of theArabidopsisgenome using the human TET1 catalytic domain

(2018) Javier Gallego-Bartolomé et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural absorption by barbule microstructures of super black bird of paradise feathers

(2018) Dakota E. McCoy et al.   Nature Communications

Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to Trait Stability

(2018) Emma S.T. Aller et al.   G3-Genes Genomes Genetics

Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing byHISTONE DEACETYLASE 108

(2018) Cristian Forestan et al.   GENETICS

The Impact of Genetic Changes during Crop Domestication

(2018) Petr Smýkal et al.   Agronomy-Basel

Structure, stability and ecological significance of natural epigenetic variation: a large-scale survey in Plantago lanceolata

(2018) Bence Gáspár et al.   NEW PHYTOLOGIST

The role of plant epigenetics in biotic interactions

(2018) Conchita Alonso et al.   NEW PHYTOLOGIST

INDETERMINATE SPIKELET 1 recruits histone deacetylase and a transcriptional repression complex to regulate rice salt tolerance

(2018) Xiliu Cheng et al.   PLANT PHYSIOLOGY

A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase

(2018) Caitlin I. Stoddard et al.   MOLECULAR CELL

Histone Acetylation Cooperating with AREB1 Transcription Factor Regulates Drought Response and Tolerance in Populus trichocarpa

(2018) Shuang Li et al.   PLANT CELL

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Exploiting induced and natural epigenetic variation for crop improvement

(2017) Nathan M. Springer et al.   NATURE REVIEWS GENETICS

Dual Role of the Histone Variant H2A.Z in Transcriptional Regulation of Stress-Response Genes

(2017) Weronika Sura et al.   PLANT CELL

Comparative analysis of Histone modifications and DNA methylation at OsBZ8 locus under salinity stress in IR64 and Nonabokra rice varieties

(2017) Amit Paul et al.   PLANT MOLECULAR BIOLOGY

The Distinct Roles of Class I and II RPD3-Like Histone Deacetylases in Salinity Stress Response

(2017) Minoru Ueda et al.   PLANT PHYSIOLOGY

Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids

(2017) Kathrin Lauss et al.   PLANT PHYSIOLOGY

The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress

(2017) Diep R. Ganguly et al.   PLANT PHYSIOLOGY

Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues

(2017) Philippe Gallusci et al.   TRENDS IN PLANT SCIENCE

The Histone Deacetylase Inhibitor Suberoylanilide Hydroxamic Acid Alleviates Salinity Stress in Cassava

(2017) Onsaya Patanun et al.   Frontiers in Plant Science

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses

(2016) Jinhui Zhao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Quantitative trait variation is revealed in a novel hypomethylated population of woodland strawberry (Fragaria vesca)

(2016) Jihua Xu et al.   BMC PLANT BIOLOGY

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

(2016) Taiji Kawakatsu et al.   CELL

Histone deacetylase HDA9 negatively regulates salt and drought stress responsiveness in Arabidopsis

(2016) Yu Zheng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic sources of population epigenomic variation

(2016) Aaron Taudt et al.   NATURE REVIEWS GENETICS

The molecular hallmarks of epigenetic control

(2016) C. David Allis et al.   NATURE REVIEWS GENETICS

Genome-Wide Mapping of Targets of Maize Histone Deacetylase HDA101 Reveals Its Function and Regulatory Mechanism during Seed Development

(2016) Hua Yang et al.   PLANT CELL

The First Rule of Plant Transposable Element Silencing: Location, Location, Location

(2016) Meredith J. Sigman et al.   PLANT CELL

HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response inArabidopsis

(2016) Daniel Buszewicz et al.   PLANT CELL AND ENVIRONMENT

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

Physical coupling of activation and derepression activities to maintain an active transcriptional state atFLC

(2016) Hongchun Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing inArabidopsis thalianaF1 epihybrids

(2016) Mélanie Rigal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Editing Technologies: Principles and Applications

(2016) Thomas Gaj et al.   Cold Spring Harbor Perspectives in Biology

A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation

(2016) Patrick T. Griffin et al.   G3-Genes Genomes Genetics

Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana

(2016) Dazhe Meng et al.   PLoS Genetics

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

(2016) P. A. Crisp et al.   Science Advances

Priming for Enhanced Defense

(2015) Uwe Conrath et al.   Annual Review of Phytopathology

Prediction of Plant Height inArabidopsis thalianaUsing DNA Methylation Data

(2015) Yaodong Hu et al.   GENETICS

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm

(2015) Meilina Ong-Abdullah et al.   NATURE

HAG3, a Histone Acetyltransferase, Affects UV-B Responses by Negatively Regulating the Expression of DNA Repair Enzymes and Sunscreen Content inArabidopsis thaliana

(2015) Julieta P. Fina et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Basis of Morphological Variation and Phenotypic Plasticity inArabidopsis thaliana

(2015) Rik Kooke et al.   PLANT CELL

Environmental perception and epigenetic memory: mechanistic insight throughFLC

(2015) Scott Berry et al.   PLANT JOURNAL

MutS HOMOLOG1-Derived Epigenetic Breeding Potential in Tomato

(2015) Xiaodong Yang et al.   PLANT PHYSIOLOGY

Epigenetic Changes in Hybrids

(2015) Ian K. Greaves et al.   PLANT PHYSIOLOGY

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize

(2015) Qing Li et al.   PLANT PHYSIOLOGY

The histone deacetylase HDA19 controls root cell elongation and modulates a subset of phosphate starvation responses in Arabidopsis

(2015) Chun-Ying Chen et al.   Scientific Reports

Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening

(2015) Weiwei Chen et al.   Scientific Reports

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

(2015) Jörg Hagmann et al.   PLoS Genetics

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

The Phaseolus vulgaris PvTRX1h gene regulates plant hormone biosynthesis in embryogenic callus from common bean

(2015) Aarón Barraza et al.   Frontiers in Plant Science

Prediction of Plant Height inArabidopsis thalianaUsing DNA Methylation Data

(2015) Yaodong Hu et al.   GENETICS

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants

(2015) Ying Li et al.   GENOME BIOLOGY

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

(2014) Ramesh Yelagandula et al.   CELL

Antagonistic Roles for H3K36me3 and H3K27me3 in the Cold-Induced Epigenetic Switch at Arabidopsis FLC

(2014) Hongchun Yang et al.   CURRENT BIOLOGY

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

(2014) Lianna M. Johnson et al.   NATURE

Environmental History Modulates Arabidopsis Pattern-Triggered Immunity in a HISTONE ACETYLTRANSFERASE1-Dependent Manner

(2014) P. Singh et al.   PLANT CELL

Genetic Perturbation of the Maize Methylome

(2014) Qing Li et al.   PLANT CELL

Epigenetics: a potential mechanism for clonal plant success

(2014) Vladimir Douhovnikoff et al.   PLANT ECOLOGY

MSH1-Induced Non-Genetic Variation Provides a Source of Phenotypic Diversity in Sorghum bicolor

(2014) Roberto de la Rosa Santamaria et al.   PLoS One

Mapping the Epigenetic Basis of Complex Traits

(2014) S. Cortijo et al.   SCIENCE

Natural occurring epialleles determine vitamin E accumulation in tomato fruits

(2014) Leandro Quadrana et al.   Nature Communications

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

(2014) Danelle K. Seymour et al.   PLoS Genetics

Dynamic regulation and function of histone monoubiquitination in plants

(2014) Jing Feng et al.   Frontiers in Plant Science

Expression analysis of histone acetyltransferases in rice under drought stress

(2013) Hui Fang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Analysis of the DNA methylation of maize (Zea mays L.) in response to cold stress based on methylation-sensitive amplified polymorphisms

(2013) Xiaohui Shan et al.   JOURNAL OF PLANT BIOLOGY

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

CRISPRs and epigenome editing

(2013) Nicole Rusk   NATURE METHODS

Combinatorial functions of diverse histone methylations inArabidopsis thalianaflowering time regulation

(2013) Sarfraz Shafiq et al.   NEW PHYTOLOGIST

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

(2013) S. R. Eichten et al.   PLANT CELL

Histone Deacetylase Complex1 Expression Level Titrates Plant Growth and Abscisic Acid Sensitivity in Arabidopsis

(2013) G. Perrella et al.   PLANT CELL

PHYTOCHROME INTERACTING FACTOR3 Associates with the Histone Deacetylase HDA15 in Repression of Chlorophyll Biosynthesis and Photosynthesis in Etiolated Arabidopsis Seedlings

(2013) X. Liu et al.   PLANT CELL

Histone Lysine Demethylases and Their Functions in Plants

(2013) Ming Luo et al.   PLANT MOLECULAR BIOLOGY REPORTER

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm

(2013) J. A. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylation levels of a novel genetic element, EgNB3 as a candidate biomarker associated with the embryogenic competency of oil palm

(2013) W. K. Ho et al.   Tree Genetics & Genomes

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice

(2013) Qingfeng Chen et al.   PLoS Genetics

Characterization of a drought inducible trithorax-like H3K4 methyltransferase from barley

(2012) D. Papaefthimiou et al.   BIOLOGIA PLANTARUM

Paramutation: a trans-homolog interaction affecting heritable gene regulation

(2012) Jay B Hollick   CURRENT OPINION IN PLANT BIOLOGY

Primed plants do not forget

(2012) V. Pastor et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis

(2012) Ming Luo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Requirement of histone acetyltransferases HAM1 and HAM2 for epigenetic modification of FLC in regulating flowering in Arabidopsis

(2012) Jun Xiao et al.   JOURNAL OF PLANT PHYSIOLOGY

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Epigenetic variation creates potential for evolution of plant phenotypic plasticity

(2012) Yuan-Ye Zhang et al.   NEW PHYTOLOGIST

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Identification and Characterization of an Epi-Allele of FIE1 Reveals a Regulatory Linkage between Two Epigenetic Marks in Rice

(2012) L. Zhang et al.   PLANT CELL

HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice

(2012) B. Ding et al.   PLANT CELL

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

Overexpression of a histone H3K4 demethylase, JMJ15, accelerates flowering time in Arabidopsis

(2012) Hongchun Yang et al.   PLANT CELL REPORTS

HDA19 is required for the repression of salicylic acid biosynthesis and salicylic acid-mediated defense responses in Arabidopsis

(2012) Sun-Mee Choi et al.   PLANT JOURNAL

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

(2012) H. Stroud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repeat associated small RNAs vary among parents and following hybridization in maize

(2012) W. T. Barber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Paramutagenicity of a p1 epiallele in maize

(2012) Wolfgang Goettel et al.   THEORETICAL AND APPLIED GENETICS

Epigenetics and crop improvement

(2012) Nathan M. Springer   TRENDS IN GENETICS

A unified phylogeny-based nomenclature for histone variants

(2012) Paul B Talbert et al.   Epigenetics & Chromatin

Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana

(2012) Angelique Deleris et al.   PLoS Genetics

A Companion Cell–Dominant and Developmentally Regulated H3K4 Demethylase Controls Flowering Time in Arabidopsis via the Repression of FLC Expression

(2012) Hongchun Yang et al.   PLoS Genetics

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs

(2011) Padubidri V Shivaprasad et al.   EMBO JOURNAL

Regulation of disease-responsive genes mediated by epigenetic factors: interaction of Arabidopsis-Pseudomonas

(2011) CLELIA DE-LA-PEÑA et al.   MOLECULAR PLANT PATHOLOGY

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy

(2011) Jian Zheng et al.   NEW PHYTOLOGIST

H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice

(2011) Pengfei Sui et al.   PLANT JOURNAL

Descendants of Primed Arabidopsis Plants Exhibit Resistance to Biotic Stress

(2011) A. Slaughter et al.   PLANT PHYSIOLOGY

Next-Generation Systemic Acquired Resistance

(2011) E. Luna et al.   PLANT PHYSIOLOGY

Regulation of imprinted gene expression inArabidopsisendosperm

(2011) Tzung-Fu Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor

(2011) M. Groszmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis

(2010) Falong Lu et al.   CELL RESEARCH

RNAi-dependent formation of heterochromatin and its diverse functions

(2010) Shiv IS Grewal   CURRENT OPINION IN GENETICS & DEVELOPMENT

Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome

(2010) Soichi Inagaki et al.   EMBO JOURNAL

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)

(2010) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

(2010) Caroline Servet et al.   Molecular Plant

Arabidopsis Putative Deacetylase AtSRT2 Regulates Basal Defense by Suppressing PAD4, EDS5 and SID2 Expression

(2010) Chunzheng Wang et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis Histone Methyltransferase SET DOMAIN GROUP8 Mediates Induction of the Jasmonate/Ethylene Pathway Genes in Plant Defense Response to Necrotrophic Fungi

(2010) A. Berr et al.   PLANT PHYSIOLOGY

Tobacco Mosaic Virus Infection Results in an Increase in Recombination Frequency and Resistance to Viral, Bacterial, and Fungal Pathogens in the Progeny of Infected Tobacco Plants

(2010) P. Kathiria et al.   PLANT PHYSIOLOGY

SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis

(2010) L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular mechanisms of polyploidy and hybrid vigor

(2010) Z. Jeffrey Chen   TRENDS IN PLANT SCIENCE

Regulatory Function of Histone Modifications in Controlling Rice Gene Expression and Plant Growth

(2010) Dao-Xiu Zhou et al.   Rice

Correction: Autoimmunity in Arabidopsis acd11 Is Mediated by Epigenetic Regulation of an Immune Receptor

(2010) Kristoffer Palma et al.   PLoS Pathogens

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Unstable transmission of rice chromosomes without functional centromeric repeats in asexual propagation

(2009) Zhiyun Gong et al.   CHROMOSOME RESEARCH

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes

(2009) J. Reinders et al.   GENES & DEVELOPMENT

Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression

(2009) J. D. Hollister et al.   GENOME RESEARCH

A transposon-induced epigenetic change leads to sex determination in melon

(2009) Antoine Martin et al.   NATURE

ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing

(2009) Yannick Jacob et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ARABIDOPSIS TRITHORAX-RELATED7 Is Required for Methylation of Lysine 4 of Histone H3 and for Transcriptional Activation of FLOWERING LOCUS C

(2009) Y. Tamada et al.   PLANT CELL

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

SET DOMAIN GROUP25 Encodes a Histone Methyltransferase and Is Involved in FLOWERING LOCUS C Activation and Repression of Flowering

(2009) A. Berr et al.   PLANT PHYSIOLOGY

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis

(2008) David Latrasse et al.   BMC PLANT BIOLOGY

The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen

(2008) Joyce A. Cartagena et al.   DEVELOPMENTAL BIOLOGY

Comparative Analysis of JmjC Domain-containing Proteins Reveals the Potential Histone Demethylases inArabidopsisand Rice

(2008) Falong Lu et al.   Journal of Integrative Plant Biology

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions

(2008) A. Saleh et al.   PLANT CELL

ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation

(2008) S. Pien et al.   PLANT CELL

Redundant Requirement for a Pair of PROTEIN ARGININE METHYLTRANSFERASE4 Homologs for the Proper Regulation of Arabidopsis Flowering Time

(2008) L. Niu et al.   PLANT PHYSIOLOGY

Invasion of the Arabidopsis Genome by the Tobacco Retrotransposon Tnt1 Is Controlled by Reversible Transcriptional Gene Silencing

(2008) J. Perez-Hormaeche et al.   PLANT PHYSIOLOGY

Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana

(2008) R. J. Schmitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development

(2008) Q. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis

(2008) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana

(2008) H. Saze et al.   SCIENCE

Suppression of the MicroRNA Pathway by Bacterial Effector Proteins

(2008) L. Navarro et al.   SCIENCE