Where do you think you’re going? Accounting for ontogenetic and climate‐induced movement in spatially stratified integrated population assessment models

Disentangling data discrepancies with integrated population models

(2019) Sarah P. Saunders et al.   ECOLOGY

Integrated population models: powerful methods to embed individual processes in population dynamics models

(2019) Floriane Plard et al.   ECOLOGY

Spatial stock assessment methods: A viewpoint on current issues and assumptions

(2019) André E. Punt   FISHERIES RESEARCH

Integrated population models: Model assumptions and inference

(2019) Thomas V. Riecke et al.   Methods in Ecology and Evolution

Incorporating citizen science data in spatially explicit integrated population models

(2019) Catherine C. Sun et al.   ECOLOGY

Predicting recruitment density dependence and intrinsic growth rate for all fishes worldwide using a data‐integrated life‐history model

(2019) James T. Thorson   FISH AND FISHERIES

Exploring the utility of different tag-recovery experimental designs for use in spatially explicit, tag-integrated stock assessment models

(2019) Daniel R. Goethel et al.   FISHERIES RESEARCH

A novel spatiotemporal stock assessment framework to better address fine‐scale species distributions: Development and simulation testing

(2019) Jie Cao et al.   FISH AND FISHERIES

Overcoming challenges of harvest quota allocation in spatially structured populations

(2019) Katelyn M. Bosley et al.   FISHERIES RESEARCH

Comparing spatial distribution modelling of fisheries data with single-area or spatially-explicit integrated population models, a case study of toothfish in the Ross Sea region

(2019) Sophie Mormede et al.   FISHERIES RESEARCH

Defining spatial structure for fishery stock assessment

(2019) Steven X. Cadrin   FISHERIES RESEARCH

Climate change, interspecific competition, and poleward vs. depth distribution shifts: Spatial analyses of the eastern Bering Sea snow and Tanner crab (Chionoecetes opilio and C. bairdi)

(2019) James T. Murphy   FISHERIES RESEARCH

Parameter estimation performance of a recapture-conditioned integrated tagging catch-at-age analysis model

(2019) Matthew T. Vincent et al.   FISHERIES RESEARCH

Synthesizing multiple data types for biological conservation using integrated population models

(2018) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

When are estimates of spawning stock biomass for small pelagic fishes improved by taking spatial structure into account?

(2018) André E. Punt et al.   FISHERIES RESEARCH

Predicting species distribution from fishers’ local ecological knowledge: an alternative for data-poor management

(2018) Priscila F. M. Lopes et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

"So, where do you come from?" The impact of assumed spatial population structure on estimates of recruitment

(2018) Steven X. Cadrin et al.   FISHERIES RESEARCH

Integrated Population Modeling Provides the First Empirical Estimates of Vital Rates and Abundance for Polar Bears in the Chukchi Sea

(2018) Eric V. Regehr et al.   Scientific Reports

The ocean’s movescape: fisheries management in the bio-logging decade (2018–2028)

(2018) Susan K Lowerre-Barbieri et al.   ICES JOURNAL OF MARINE SCIENCE

Ontogeny matters: Climate variability and effects on fish distribution in the eastern Bering Sea

(2017) Steven J. Barbeaux et al.   FISHERIES OCEANOGRAPHY

Modelling recruitment in a spatial context: A review of current approaches, simulation evaluation of options, and suggestions for best practices

(2017) André E. Punt   FISHERIES RESEARCH

Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being

(2017) Gretta T. Pecl et al.   SCIENCE

Reproductive resilience: a paradigm shift in understanding spawner-recruit systems in exploited marine fish

(2016) Susan Lowerre-Barbieri et al.   FISH AND FISHERIES

Can a spatially-structured stock assessment address uncertainty due to closed areas? A case study based on pink ling in Australia

(2016) André E. Punt et al.   FISHERIES RESEARCH

Adult-mediated connectivity affects inferences on population dynamics and stock assessment of nursery-dependent fish populations

(2016) Benoit Archambault et al.   FISHERIES RESEARCH

Lessons learned from practical approaches to reconcile mismatches between biological population structure and stock units of marine fish

(2016) Lisa A. Kerr et al.   ICES JOURNAL OF MARINE SCIENCE

Observing and managing seascapes: linking synoptic oceanography, ecological processes, and geospatial modelling

(2016) Manuel Hidalgo et al.   ICES JOURNAL OF MARINE SCIENCE

Using spatio-temporal models of population growth and movement to monitor overlap between human impacts and fish populations

(2016) James T. Thorson et al.   JOURNAL OF APPLIED ECOLOGY

Close-Kin Mark-Recapture

(2016) Mark V. Bravington et al.   STATISTICAL SCIENCE

Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan

(2016) Satoshi Yamamoto et al.   PLoS One

Marine reserve design theory for species with ontogenetic migration

(2015) J. W. White   Biology Letters

Testing the performance of a spatially explicit tag-integrated stock assessment model of yellowtail flounder (Limanda ferruginea) through simulation analysis

(2015) Daniel R. Goethel et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Accounting for marine reserves using spatial stock assessments

(2015) Carey R. McGilliard et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Modelling age-dependent movement: an application to red and gag groupers in the Gulf of Mexico

(2015) Thomas R. Carruthers et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Using movement data from electronic tags in fisheries stock assessment: A review of models, technology and experimental design

(2015) Tim Sippel et al.   FISHERIES RESEARCH

Random effect estimation of time-varying factors in Stock Synthesis

(2014) J. T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Demonstration of a spatially explicit, tag-integrated stock assessment model with application to three interconnected stocks of yellowtail flounder off of New England

(2014) D. R. Goethel et al.   ICES JOURNAL OF MARINE SCIENCE

Mixed effects: a unifying framework for statistical modelling in fisheries biology

(2014) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Performance of stock assessments with misspecified age- and time-varying natural mortality

(2013) Jonathan J. Deroba et al.   FISHERIES RESEARCH

Use of multiple selectivity patterns as a proxy for spatial structure

(2013) Felipe Hurtado-Ferro et al.   FISHERIES RESEARCH

Spatially explicit integrated population models

(2013) Richard B. Chandler et al.   Methods in Ecology and Evolution

Integrating movement ecology with biodiversity research - exploring new avenues to address spatiotemporal biodiversity dynamics

(2013) Florian Jeltsch et al.   Movement Ecology

A framework to assess national level vulnerability from the perspective of food security: The case of coral reef fisheries

(2012) Sara Hughes et al.   ENVIRONMENTAL SCIENCE & POLICY

Can steepness of the stock–recruitment relationship be estimated in fishery stock assessment models?

(2012) Hui-Hua Lee et al.   FISHERIES RESEARCH

A review of integrated analysis in fisheries stock assessment

(2012) Mark N. Maunder et al.   FISHERIES RESEARCH

Theory, consequences and evidence of eroding population spatial structure in harvested marine fishes: a review

(2012) L Ciannelli et al.   MARINE ECOLOGY PROGRESS SERIES

Projecting species’ range expansion dynamics: sources of systematic biases when scaling up patterns and processes

(2012) Greta Bocedi et al.   Methods in Ecology and Evolution

Including mark–recapture data into a spatial age-structured model: walleye pollock (Theragra chalcogramma) in the eastern Bering Sea

(2011) Peter-John F. Hulson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Risks of ignoring fish population spatial structure in fisheries management

(2011) Yiping Ying et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

Incorporating Spatial Structure in Stock Assessment: Movement Modeling in Marine Fish Population Dynamics

(2011) Daniel R. Goethel et al.   REVIEWS IN FISHERIES SCIENCE

When can we reliably estimate the productivity of fish stocks?

(2010) Paul B. Conn et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Guidelines for incorporating fish distribution shifts into a fisheries management context

(2010) Jason S Link et al.   FISH AND FISHERIES

Reconciling stock assessment and management scales under conditions of spatially varying catch histories

(2010) Jason M. Cope et al.   FISHERIES RESEARCH

Integrating vessel monitoring systems (VMS) data with daily catch data from logbooks to explore the spatial distribution of catch and effort at high resolution

(2010) H. Gerritsen et al.   ICES JOURNAL OF MARINE SCIENCE

Sensitivity of tag-recovery mortality estimates to inaccuracies in tag shedding, handling mortality, and tag reporting

(2010) Travis O. Brenden et al.   JOURNAL OF GREAT LAKES RESEARCH

A movement ecology paradigm for unifying organismal movement research

(2008) R. Nathan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA