Breeding selection imposed a differential selective pressure on the wheat root-associated microbiome

Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists

(2020) Maike Rossmann et al.   FEMS MICROBIOLOGY ECOLOGY

Wheat dwarfing influences selection of the rhizosphere microbiome

(2020) Vanessa N. Kavamura et al.   Scientific Reports

Agricultural Selection of Wheat Has Been Shaped by Plant-Microbe Interactions

(2020) Andrzej Tkacz et al.   Frontiers in Microbiology

Tracing the ancestry of modern bread wheats

(2019) Caroline Pont et al.   NATURE GENETICS

Maize synthesized benzoxazinoids affect the host associated microbiome

(2019) Enoch Narh Kudjordjie et al.   Microbiome

Ancient wheat varieties have a higher ability to interact with plant growth‐promoting rhizobacteria

(2019) Jordan Valente et al.   PLANT CELL AND ENVIRONMENT

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

(2019) Vanessa L. Brisson et al.   Scientific Reports

Cropping history shapes fungal, oomycete and nematode communities in arable soils and affects cavity spot in carrot

(2018) Rumakanta Sapkota et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Genetic relationship of diploid wheat (Triticum spp.) species assessed by SSR markers

(2018) Mehraj Abbasov et al.   GENETIC RESOURCES AND CROP EVOLUTION

Ancient wheat species and human health: Biochemical and clinical implications

(2018) Monica Dinu et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

Medium shapes the microbial community of water filters with implications for effluent quality

(2018) Marta Vignola et al.   WATER RESEARCH

Impact of domestication on the evolution of rhizomicrobiome of rice in response to the presence of Magnaporthe oryzae

(2018) Shaohua Shi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated Setaria

(2018) Srinivasa Chaluvadi et al.   Frontiers in Plant Science

The wild side of plant microbiomes

(2018) Juan E. Pérez-Jaramillo et al.   Microbiome

Nitrotoga is selected over Nitrospira in newly assembled biofilm communities from a tap water source community at increased nitrite loading

(2017) Marta Kinnunen et al.   ENVIRONMENTAL MICROBIOLOGY

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

Evolution of the Crop Rhizosphere: Impact of Domestication on Root Exudates in Tetraploid Wheat (Triticum turgidum L.)

(2017) Anna Iannucci et al.   Frontiers in Plant Science

A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition

(2016) A.B. Siddique et al.   Fungal Ecology

Metabolomic diversity for biochemical traits of Triticum sub-species

(2016) Agata Rascio et al.   JOURNAL OF CEREAL SCIENCE

Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels

(2016) Romina Beleggia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus

(2016) Jonathan W. Leff et al.   NEW PHYTOLOGIST

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function

(2016) Jennifer E. Schmidt et al.   Frontiers in Plant Science

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars

(2015) Márton Szoboszlay et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima—ancestor of all beet crops—and modern sugar beets

(2014) Christin Zachow et al.   Frontiers in Microbiology

Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

(2013) Alison Morris et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The Rhizosphere Selects for Particular Groups of Acidobacteria and Verrucomicrobia

(2013) Ulisses Nunes da Rocha et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten

(2011) James Rosindell et al.   TRENDS IN ECOLOGY & EVOLUTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS