Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome

Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA

(2020) M.C. Liu et al.   ANNALS OF ONCOLOGY

Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study

(2020) Ruben Van Paemel et al.   Epigenetics

Assessment of Pre-Analytical Sample Handling Conditions for Comprehensive Liquid Biopsy Analysis

(2020) Teresa Gerber et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Circulating Cell-Free DNA and RNA Analysis as Liquid Biopsy: Optimal Centrifugation Protocol

(2019) Laure Sorber et al.   Cancers

Impact of blood storage and sample handling on quality of high dimensional flow cytometric data in multicenter clinical research

(2019) A.M. Diks et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Specialized Blood Collection Tubes for Liquid Biopsy: Improving the Pre-analytical Conditions

(2019) Laure Sorber et al.   Molecular Diagnosis & Therapy

Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory

(2018) Sergey Nikolaev et al.   ANALYTICAL BIOCHEMISTRY

Evaluation of Preanalytical Conditions and Implementation of Quality Control Steps for Reliable Gene Expression and DNA Methylation Analyses in Liquid Biopsies

(2018) Martha Zavridou et al.   CLINICAL CHEMISTRY

gDNA extraction yield and methylation status of blood samples are affected by long-term storage conditions

(2018) Charlotte Schröder et al.   PLoS One

Evaluation of pre-analytical factors affecting plasma DNA analysis

(2018) Havell Markus et al.   Scientific Reports

Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease

(2018) Joshua Moss et al.   Nature Communications

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

(2017) Shicheng Guo et al.   NATURE GENETICS

Integrating liquid biopsies into the management of cancer

(2017) Giulia Siravegna et al.   Nature Reviews Clinical Oncology

The Encyclopedia of DNA elements (ENCODE): data portal update

(2017) Carrie A Davis et al.   NUCLEIC ACIDS RESEARCH

Performance of Streck cfDNA Blood Collection Tubes for Liquid Biopsy Testing

(2016) Inga Medina Diaz et al.   PLoS One

Cell-free DNA: Preanalytical variables

(2015) Abel Jacobus Bronkhorst et al.   CLINICA CHIMICA ACTA

Formaldehyde Crosslinking: A Tool for the Study of Chromatin Complexes

(2015) Elizabeth A. Hoffman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments

(2015) Kun Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytosine Deamination Is a Major Cause of Baseline Noise in Next-Generation Sequencing

(2014) Guoli Chen et al.   Molecular Diagnosis & Therapy

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

(2014) Pieter Mestdagh et al.   NATURE METHODS

BLUEPRINT to decode the epigenetic signature written in blood

(2012) David Adams et al.   NATURE BIOTECHNOLOGY

Comparison of alignment software for genome-wide bisulphite sequence data

(2012) Aniruddha Chatterjee et al.   NUCLEIC ACIDS RESEARCH

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS