RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection

Screening Potato Cultivars for new Sources of Resistance to Potato virus Y

(2014) Jenny S. Rowley et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Salicylic acid is an indispensable component of the Ny-1 resistance-gene-mediated response against Potato virus Y infection in potato

(2014) Š. Baebler et al.   JOURNAL OF EXPERIMENTAL BOTANY

TheArabidopsis thalianamitogen-activated protein kinases MPK3 and MPK6 target a subclass of ‘VQ-motif’-containing proteins to regulate immune responses

(2014) Pascal Pecher et al.   NEW PHYTOLOGIST

Comprehensive analysis of VQ motif-containing gene expression in rice defense responses to three pathogens

(2014) Na Li et al.   PLANT CELL REPORTS

Continuous and Emerging Challenges of Potato virus Y in Potato

(2013) Alexander V. Karasev et al.   Annual Review of Phytopathology

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions

(2013) Liangliang Gao et al.   BMC GENOMICS

Wheat resistome in response to barley yellow dwarf virus infection

(2013) Xindong Wang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptome characterization and sequencing-based identification of drought-responsive genes in potato

(2013) Ning Zhang et al.   MOLECULAR BIOLOGY REPORTS

β-1,3-glucanase class III promotes spread of PVYNTN and improves in planta protein production

(2013) David Dobnik et al.   Plant Biotechnology Reports

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

(2013) Florian Jupe et al.   PLANT JOURNAL

Characterization and RNA-seq analysis of underperformer, an activation-tagged potato mutant

(2013) Sukhwinder S. Aulakh et al.   PLANT MOLECULAR BIOLOGY

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

(2013) Franck Rapaport et al.   GENOME BIOLOGY

Genetic Diversity of Potato virus Y Complex

(2012) Alexander V. Karasev et al.   AMERICAN JOURNAL OF POTATO RESEARCH

Identification and localisation of the NB-LRR gene family within the potato genome

(2012) Florian Jupe et al.   BMC GENOMICS

Genetic Determinants of Potato virus Y Required to Overcome or Trigger Hypersensitive Resistance to PVY Strain Group O Controlled by the Gene Ny in Potato

(2012) Yan-Ping Tian et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Structural and Functional Analysis of VQ Motif-Containing Proteins in Arabidopsis as Interacting Proteins of WRKY Transcription Factors

(2012) Y. Cheng et al.   PLANT PHYSIOLOGY

Genome-Wide Identification and Mapping of NBS-Encoding Resistance Genes in Solanum tuberosum Group Phureja

(2012) Roberto Lozano et al.   PLoS One

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Arabidopsis Sigma Factor Binding Proteins Are Activators of the WRKY33 Transcription Factor in Plant Defense

(2011) Z. Lai et al.   PLANT CELL

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

(2011) Jason S. Cumbie et al.   PLoS One

Dynamics of Responses in Compatible Potato - Potato virus Y Interaction Are Modulated by Salicylic Acid

(2011) Špela Baebler et al.   PLoS One

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Premier Russet: A Dual-Purpose, Potato Cultivar with Significant Resistance to Low Temperature Sweetening During Long-Term Storage

(2009) R. G. Novy et al.   AMERICAN JOURNAL OF POTATO RESEARCH

PVYNTNelicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation

(2009) ŠPELA BAEBLER et al.   MOLECULAR PLANT PATHOLOGY

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols