RAB13 mRNA compartmentalisation spatially orients tissue morphogenesis

Optogenetic control of mRNA localization and translation in live cells

(2020) Na Yeon Kim et al.   NATURE CELL BIOLOGY

Mechanisms and consequences of subcellular RNA localization across diverse cell types

(2020) Krysta L. Engel et al.   TRAFFIC

RNA localization and co‐translational interactions control RAB 13 GTP ase function and cell migration

(2020) Konstadinos Moissoglu et al.   EMBO JOURNAL

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+

(2019) Chee-Huat Linus Eng et al.   NATURE

Sending messages in moving cells: mRNA localization and the regulation of cell migration

(2019) Shane P. Herbert et al.   Essays in Biochemistry

Translational regulation of protrusion-localized RNAs involves silencing and clustering after transport

(2019) Konstadinos Moissoglu et al.   eLife

Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression

(2019) Chenglong Xia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments

(2018) Georgi Tushev et al.   NEURON

Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments

(2018) Camilla Ciolli Mattioli et al.   NUCLEIC ACIDS RESEARCH

Filopodyan: An open-source pipeline for the analysis of filopodia

(2017) Vasja Urbančič et al.   JOURNAL OF CELL BIOLOGY

TrackMate: An open and extensible platform for single-particle tracking

(2017) Jean-Yves Tinevez et al.   METHODS

Global mRNA polarization regulates translation efficiency in the intestinal epithelium

(2017) Andreas E. Moor et al.   SCIENCE

Extracellular matrix stiffness and cell contractility control RNA localization to promote cell migration

(2017) Tianhong Wang et al.   Nature Communications

Pumilio-dependent localization of mRNAs at the cell front coordinates multiple pathways required for chemotaxis

(2017) Manuel Hotz et al.   Nature Communications

RNA localization is a key determinant of neurite-enriched proteome

(2017) Alessandra Zappulo et al.   Nature Communications

Distal Alternative Last Exons Localize mRNAs to Neural Projections

(2016) J. Matthew Taliaferro et al.   MOLECULAR CELL

Asymmetric division coordinates collective cell migration in angiogenesis

(2016) Guilherme Costa et al.   NATURE CELL BIOLOGY

The front and rear of collective cell migration

(2016) Roberto Mayor et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Presynaptic Protein Synthesis Is Required for Long-Term Plasticity of GABA Release

(2016) Thomas J. Younts et al.   NEURON

smiFISH and FISH-quant – a flexible single RNA detection approach with super-resolution capability

(2016) Nikolay Tsanov et al.   NUCLEIC ACIDS RESEARCH

Evolution and Biological Roles of Alternative 3′UTRs

(2016) Christine Mayr   TRENDS IN CELL BIOLOGY

Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions

(2015) Faraz K. Mardakheh et al.   DEVELOPMENTAL CELL

DENND2B activates Rab13 at the leading edge of migrating cells and promotes metastatic behavior

(2015) Maria S. Ioannou et al.   JOURNAL OF CELL BIOLOGY

Direct visualization of newly synthesized target proteins in situ

(2015) Susanne tom Dieck et al.   NATURE METHODS

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo

(2015) Miguel A Moreno-Mateos et al.   NATURE METHODS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

In the right place at the right time: visualizing and understanding mRNA localization

(2014) Adina R. Buxbaum et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems

(2014) Robert J Weatheritt et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Role of PFKFB3-Driven Glycolysis in Vessel Sprouting

(2013) Katrien De Bock et al.   CELL

Junctional Rab13-binding protein (JRAB) regulates cell spreading via filamins

(2013) Ayuko Sakane et al.   GENES TO CELLS

FISH-quant: automatic counting of transcripts in 3D FISH images

(2013) Florian Mueller et al.   NATURE METHODS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Rab13 Small G Protein and Junctional Rab13-binding Protein (JRAB) Orchestrate Actin Cytoskeletal Organization during Epithelial Junctional Development

(2012) Ayuko Sakane et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CPEB-mediated ZO-1 mRNA localization is required for epithelial tight-junction assembly and cell polarity

(2012) Kentaro Nagaoka et al.   Nature Communications

An Unbiased Analysis Method to Quantify mRNA Localization Reveals Its Correlation with Cell Motility

(2012) Hye Yoon Park et al.   Cell Reports

Uses of thein vitroendothelial–fibroblast organotypic co-culture assay in angiogenesis research : Figure 1

(2011) Clare Hetheridge et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Rab13-dependent Trafficking of RhoA Is Required for Directional Migration and Angiogenesis

(2011) Chuanshen Wu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Nuclear Guanine Nucleotide Exchange Factors Ect2 and Net1 Regulate RhoB-Mediated Cell Death after DNA Damage

(2011) Melissa C. Srougi et al.   PLoS One

Adenomatous Polyposis Coli Regulates Endothelial Cell Migration Independent of Roles in β-Catenin Signaling and Cell–Cell Adhesion

(2010) Elizabeth S. Harris et al.   MOLECULAR BIOLOGY OF THE CELL

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Antagonistic interactions among Plexins regulate the timing of intersegmental vessel formation

(2009) Ryan E. Lamont et al.   DEVELOPMENTAL BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

To localize or not to localize: mRNA fate is in 3′UTR ends

(2009) Catia Andreassi et al.   TRENDS IN CELL BIOLOGY

Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons

(2008) Juan Ji An et al.   CELL

Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions

(2008) Stavroula Mili et al.   NATURE

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH