RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit

Combining Transcriptome Assemblies from Multiple De Novo Assemblers in the Allo-Tetraploid Plant Nicotiana benthamiana

(2014) Kenlee Nakasugi et al.   PLoS One

Plants, Diet, and Health

(2013) Cathie Martin et al.   Annual Review of Plant Biology

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Annual changes in bioactive contents and production in field-grown blackberry after inoculation with Pseudomonas fluorescens

(2013) B. Ramos-Solano et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Blackberry Fruit: A Review on Its Composition and Chemistry, Metabolism and Bioavailability, and Health Benefits

(2011) Lydia Kaume et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Cloning and characterization of an expansin gene, RiEXP1, and a 1-aminocyclopropane-1-carboxylic acid synthase gene, RiACS1 in ripening fruit of raspberry (Rubus idaeus L.)

(2010) Desen Zheng et al.   PLANT SCIENCE

Short-Read Sequencing Technologies for Transcriptional Analyses

(2009) Stacey A. Simon et al.   Annual Review of Plant Biology

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL)

(2009) Angzzas Kassim et al.   MOLECULAR NUTRITION & FOOD RESEARCH

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Molecular and biochemical characterization of benzalacetone synthase and chalcone synthase genes and their proteins from raspberry (Rubus idaeus L.)

(2007) Desen Zheng et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS