Transcriptomes of newly-isolated Trypanosoma brucei rhodesiense reveal hundreds of mRNAs that are co-regulated with stumpy-form markers

Transcriptomic profiling of gene expression and RNA processing duringLeishmania majordifferentiation

(2015) Laura A. L. Dillon et al.   NUCLEIC ACIDS RESEARCH

Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome

(2015) K. Lott et al.   NUCLEIC ACIDS RESEARCH

Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei

(2014) Bryan C Jensen et al.   BMC GENOMICS

Depletion of the Trypanosome Pumilio Domain Protein PUF2 or of Some Other Essential Proteins Causes Transcriptome Changes Related to Coding Region Length

(2014) Bhaskar Anand Jha et al.   EUKARYOTIC CELL

Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels

(2014) Abeer Fadda et al.   MOLECULAR MICROBIOLOGY

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

(2014) Juan-José Vasquez et al.   NUCLEIC ACIDS RESEARCH

Evolution of the primate trypanolytic factor APOL1

(2014) R. Thomson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methods to Determine the Transcriptomes of Trypanosomes in Mixtures with Mammalian Cells: The Effects of Parasite Purification and Selective cDNA Amplification

(2014) Julius Mulindwa et al.   PLoS Neglected Tropical Diseases

Insights into the Trypanosome-Host Interactions Revealed through Transcriptomic Analysis of Parasitized Tsetse Fly Salivary Glands

(2014) Erich Loza Telleria et al.   PLoS Neglected Tropical Diseases

A short bifunctional element operates to positively or negatively regulate ESAG9 expression in different developmental forms of Trypanosoma brucei

(2013) S. L. Monk et al.   JOURNAL OF CELL SCIENCE

Genome-wide dissection of the quorum sensing signalling pathway in Trypanosoma brucei

(2013) Binny M. Mony et al.   NATURE

The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability

(2013) Sachin Kumar Gupta et al.   NUCLEIC ACIDS RESEARCH

Regulation of Trypanosoma brucei Total and Polysomal mRNA during Development within Its Mammalian Host

(2013) Paul Capewell et al.   PLoS One

The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation

(2013) A. Fadda et al.   RNA

Post-Transcriptional Regulation of the Trypanosome Heat Shock Response by a Zinc Finger Protein

(2013) Dorothea Droll et al.   PLoS Pathogens

Bloodstream form pre-adaptation to the tsetse fly in Trypanosoma brucei

(2013) Eva Rico et al.   Frontiers in Cellular and Infection Microbiology

Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei

(2012) Martin Wurst et al.   MOLECULAR MICROBIOLOGY

Transmission Stages Dominate Trypanosome Within-Host Dynamics during Chronic Infections

(2011) Paula MacGregor et al.   Cell Host & Microbe

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

(2011) S. Alsford et al.   GENOME RESEARCH

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Cell Cycle Regulated Transcriptome of Trypanosoma brucei

(2011) Stuart K. Archer et al.   PLoS One

The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

(2011) T. Manful et al.   RNA

A novel phosphatase cascade regulates differentiation in Trypanosoma brucei via a glycosomal signaling pathway

(2010) B. Szoor et al.   GENES & DEVELOPMENT

The trypanolytic factor of human serum: many ways to enter the parasite, a single way to kill

(2010) Benoit Vanhollebeke et al.   MOLECULAR MICROBIOLOGY

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

(2010) Tim Nicolai Siegel et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

(2009) Sarah Kabani et al.   BMC GENOMICS

Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei

(2009) Bryan C Jensen et al.   BMC GENOMICS

A surface transporter family conveys the trypanosome differentiation signal

(2009) Samuel Dean et al.   NATURE

Trypanosoma brucei PUF9 Regulates mRNAs for Proteins Involved in Replicative Processes over the Cell Cycle

(2009) Stuart K. Archer et al.   PLoS Pathogens

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH