Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
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Title
Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
Authors
Keywords
Transfer RNA (tRNA), microRNA (miRNA), Next generation (deep) sequencing (NGS), Predictive biomarkers, DNA methyltransferase inhibitor, Response to therapy, Myelodysplastic syndromes (MDS)
Journal
BMC GENOMICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-09-24
DOI
10.1186/s12864-015-1929-y
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Note: Only part of the references are listed.- Specific molecular signatures predict decitabine response in chronic myelomonocytic leukemia
- (2015) Kristen Meldi et al. JOURNAL OF CLINICAL INVESTIGATION
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- (2015) Timothy D. O’Brien et al. METHODS
- The importance of being modified: an unrealized code to RNA structure and function
- (2015) Paul F. Agris RNA
- Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains
- (2015) P. S. Shen et al. SCIENCE
- Mining diverse small RNA species in the deep transcriptome
- (2015) Kasey C. Vickers et al. TRENDS IN BIOCHEMICAL SCIENCES
- TET2 mutations predict response to hypomethylating agents in myelodysplastic syndrome patients
- (2014) R. Bejar et al. BLOOD
- Alternative applications for distinct RNA sequencing strategies
- (2014) Leng Han et al. BRIEFINGS IN BIOINFORMATICS
- Inactivation of p53 Is Insufficient to Allow B Cells and B-Cell Lymphomas to Survive Without Dicer
- (2014) C. M. Adams et al. CANCER RESEARCH
- Multi-perspective quality control of Illumina exome sequencing data using QC3
- (2014) Yan Guo et al. GENOMICS
- Age-related mutations associated with clonal hematopoietic expansion and malignancies
- (2014) Mingchao Xie et al. NATURE MEDICINE
- Clonal Hematopoiesis and Blood-Cancer Risk Inferred from Blood DNA Sequence
- (2014) Giulio Genovese et al. NEW ENGLAND JOURNAL OF MEDICINE
- Age-Related Clonal Hematopoiesis Associated with Adverse Outcomes
- (2014) Siddhartha Jaiswal et al. NEW ENGLAND JOURNAL OF MEDICINE
- Broad and adaptable RNA structure recognition by the human interferon-induced tetratricopeptide repeat protein IFIT5
- (2014) G. E. Katibah et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis
- (2014) Peter J Enyeart et al. Mobile DNA
- Reliable Identification of Genomic Variants from RNA-Seq Data
- (2013) Robert Piskol et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Prognostic impact of the number of methylated genes in myelodysplastic syndromes and acute myeloid leukemias treated with azacytidine
- (2013) María Abáigar et al. ANNALS OF HEMATOLOGY
- Evaluation of read count based RNAseq analysis methods
- (2013) Yan Guo et al. BMC GENOMICS
- Beyond microRNA – Novel RNAs derived from small non-coding RNA and their implication in cancer
- (2013) Elena S. Martens-Uzunova et al. CANCER LETTERS
- RNA-seq-based mapping and candidate identification of mutations from forward genetic screens
- (2013) A. C. Miller et al. GENOME RESEARCH
- Mutation inADAT3, encoding adenosine deaminase acting on transfer RNA, causes intellectual disability and strabismus
- (2013) Anas M Alazami et al. JOURNAL OF MEDICAL GENETICS
- Expression of nucleoside-metabolizing enzymes in myelodysplastic syndromes and modulation of response to azacitidine
- (2013) A Valencia et al. LEUKEMIA
- Methylation of promoters of microRNAs and their host genes in myelodysplastic syndromes
- (2013) Begum Erdogan et al. LEUKEMIA & LYMPHOMA
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2014
- (2013) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data
- (2013) Yan Guo et al. PLoS One
- Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing
- (2013) S. Mohr et al. RNA
- HAMR: high-throughput annotation of modified ribonucleotides
- (2013) P. Ryvkin et al. RNA
- Mutations in NSUN2 Cause Autosomal- Recessive Intellectual Disability
- (2012) Lia Abbasi-Moheb et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
- (2012) Jorge Duitama et al. BMC GENOMICS
- The Origin and Evolution of Mutations in Acute Myeloid Leukemia
- (2012) John S. Welch et al. CELL
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Cancer-associated somaticDICER1hotspot mutations cause defective miRNA processing and reverse-strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage
- (2012) MS Anglesio et al. JOURNAL OF PATHOLOGY
- New mitochondrial DNA mutations in tRNA associated with three severe encephalopamyopathic phenotypes: neonatal, infantile, and childhood onset
- (2012) María del Mar O’Callaghan et al. NEUROGENETICS
- Hints of tRNA-Derived Small RNAs Role in RNA Silencing Mechanisms
- (2012) Maria Rosa Garcia-Silva et al. Genes
- Incidence of the myelodysplastic syndromes using a novel claims-based algorithm: high number of uncaptured cases by cancer registries
- (2011) C. R. Cogle et al. BLOOD
- Identification of a risk dependent microRNA expression signature in myelodysplastic syndromes
- (2011) Lubomir Sokol et al. BRITISH JOURNAL OF HAEMATOLOGY
- Diagnostic microRNAs in myelodysplastic syndrome
- (2011) Begum Erdogan et al. EXPERIMENTAL HEMATOLOGY
- Deficit of tRNALys modification by Cdkal1 causes the development of type 2 diabetes in mice
- (2011) Fan-Yan Wei et al. JOURNAL OF CLINICAL INVESTIGATION
- Deep sequencing reveals 50 novel genes for recessive cognitive disorders
- (2011) Hossein Najmabadi et al. NATURE
- Recurrent SomaticDICER1Mutations in Nonepithelial Ovarian Cancers
- (2011) Alireza Heravi-Moussavi et al. NEW ENGLAND JOURNAL OF MEDICINE
- Reversible infantile respiratory chain deficiency: A clinical and molecular study
- (2010) Masakazu Mimaki et al. ANNALS OF NEUROLOGY
- baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
- (2010) Thomas J Hardcastle et al. BMC BIOINFORMATICS
- Distinctive microRNA expression profiles in CD34+ bone marrow cells from patients with myelodysplastic syndrome
- (2010) Michaela Dostalova Merkerova et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Hematopoiesis-related microRNA expression in myelodysplastic syndromes
- (2010) Aina Pons et al. LEUKEMIA & LYMPHOMA
- Aberrant microRNA expression pattern in myelodysplastic bone marrow cells
- (2010) Kais Hussein et al. LEUKEMIA RESEARCH
- Distinct high resolution genome profiles of early onset and late onset colorectal cancer integrated with gene expression data identify candidate susceptibility loci
- (2010) Marianne Berg et al. Molecular Cancer
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- (2010) Xiaowen Tang et al. MOLECULAR GENETICS AND METABOLISM
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- (2010) Jian-You Liao et al. PLoS One
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- (2010) Simon Anders et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Erythroid dysplasia, megaloblastic anemia, and impaired lymphopoiesis arising from mitochondrial dysfunction
- (2009) M. L. Chen et al. BLOOD
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- (2009) M. E. Figueroa et al. BLOOD
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- (2009) Yan W Asmann et al. BMC GENOMICS
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- (2009) Debrah M. Thompson et al. CELL
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- (2009) Yong Sun Lee et al. GENES & DEVELOPMENT
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- (2009) Joanna L. Elson et al. HUMAN MUTATION
- Angiogenin cleaves tRNA and promotes stress-induced translational repression
- (2009) Satoshi Yamasaki et al. JOURNAL OF CELL BIOLOGY
- The DNA methyltransferase inhibitors azacitidine, decitabine and zebularine exert differential effects on cancer gene expression in acute myeloid leukemia cells
- (2009) C Flotho et al. LEUKEMIA
- Identification of miR-145 and miR-146a as mediators of the 5q– syndrome phenotype
- (2009) Daniel T Starczynowski et al. NATURE MEDICINE
- Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
- (2009) C. Cole et al. RNA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Hidden layers of human small RNAs
- (2008) Hideya Kawaji et al. BMC GENOMICS
- Polymorphisms in the TCF7L2, CDKAL1 and SLC30A8 genes are associated with impaired proinsulin conversion
- (2008) K. Kirchhoff et al. DIABETOLOGIA
- Stress induces tRNA cleavage by angiogenin in mammalian cells
- (2008) Hanjiang Fu et al. FEBS LETTERS
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Identification of RPS14 as a 5q- syndrome gene by RNA interference screen
- (2008) Benjamin L. Ebert et al. NATURE
- Stem cell transcriptome profiling via massive-scale mRNA sequencing
- (2008) Nicole Cloonan et al. NATURE METHODS
- The beginning of the end for microarrays?
- (2008) Jay Shendure NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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