Autoimmune Hepatitis: Shifts in Gut Microbiota and Metabolic Pathways among Egyptian Patients

Amino acid metabolism as drug target in autoimmune diseases

(2019) Giada Mondanelli et al.   AUTOIMMUNITY REVIEWS

Alterations of gut microbiome in autoimmune hepatitis

(2019) Yiran Wei et al.   GUT

Translocation of a gut pathobiont drives autoimmunity in mice and humans

(2018) S. Manfredo Vieira et al.   SCIENCE

Dysbiosis of gut microbiota was closely associated with psoriasis

(2018) Linsheng Huang et al.   Science China-Life Sciences

The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism

(2018) Sarah Just et al.   Microbiome

Suppressed hepatic bile acid signalling despite elevated production of primary and secondary bile acids in NAFLD

(2017) Na Jiao et al.   GUT

Hepatic inflammation caused by dysregulated bile acid synthesis is reversible by butyrate supplementation

(2017) Lili Sheng et al.   JOURNAL OF PATHOLOGY

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models

(2017) Egle Cekanaviciute et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Inflammation Induced by Lipopolysaccharide can be Mitigated by Short-chain Fatty Acid, Butyrate, through Upregulation of IL-10 in Septic Shock

(2017) F. Wang et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

Identification of key metabolic changes during liver fibrosis progression in rats using a urine and serum metabolomics approach

(2017) Hong Chang et al.   Scientific Reports

Novel metabolic and physiological functions of branched chain amino acids: a review

(2017) Shihai Zhang et al.   Journal of Animal Science and Biotechnology

The dual role of short fatty acid chains in the pathogenesis of autoimmune disease models

(2017) Miho Mizuno et al.   PLoS One

16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome

(2017) Daniel E. Almonacid et al.   PLoS One

Butyrate-producing bacteria supplemented in vitro to Crohn’s disease patient microbiota increased butyrate production and enhanced intestinal epithelial barrier integrity

(2017) Annelies Geirnaert et al.   Scientific Reports

Cirrhosis related functionality characteristic of the fecal microbiota as revealed by a metaproteomic approach

(2016) Xiao Wei et al.   BMC GASTROENTEROLOGY

CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands

(2016) Bruno Lamas et al.   NATURE MEDICINE

Factoring the intestinal microbiome into the pathogenesis of autoimmune hepatitis

(2016) Albert J Czaja   WORLD JOURNAL OF GASTROENTEROLOGY

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

(2016) Jun Chen et al.   Genome Medicine

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls

(2016) Jun Chen et al.   Scientific Reports

Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes

(2015) Aimon K. Alkanani et al.   DIABETES

Transitioning from Idiopathic to Explainable Autoimmune Hepatitis

(2015) Albert J. Czaja   DIGESTIVE DISEASES AND SCIENCES

Autoimmune liver disease and concomitant extrahepatic autoimmune disease

(2015) Paolo Muratori et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

A novel “humanized mouse” model for autoimmune hepatitis and the association of gut microbiota with liver inflammation

(2015) Muhammed Yuksel et al.   HEPATOLOGY

Dietary Fatty Acids Directly Impact Central Nervous System Autoimmunity via the Small Intestine

(2015) Aiden Haghikia et al.   IMMUNITY

Dietary Sodium Butyrate Decreases Postweaning Diarrhea by Modulating Intestinal Permeability and Changing the Bacterial Communities in Weaned Piglets

(2015) Chang Huang et al.   JOURNAL OF NUTRITION

Amino acid auxotrophy as a system of immunological control nodes

(2015) Peter J Murray   NATURE IMMUNOLOGY

Interaction of Intestinal Microorganisms with the Human Host in the Framework of Autoimmune Diseases

(2015) Borja Sánchez et al.   Frontiers in Immunology

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Inhibition of p38 Mitogen-Activated Protein Kinase Attenuates Butyrate-Induced Intestinal Barrier Impairment in a Caco-2 Cell Monolayer Model

(2014) Xiao-Zhong Huang et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Mucosal immunity in liver autoimmunity: A comprehensive review

(2013) Palak J. Trivedi et al.   JOURNAL OF AUTOIMMUNITY

Microbiota and Autoimmunity

(2013) A. V. Chervonsky   Cold Spring Harbor Perspectives in Biology

Community differentiation of the cutaneous microbiota in psoriasis

(2013) Alexander V Alekseyenko et al.   Microbiome

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Intestinal Bacterial Colonization Induces Mutualistic Regulatory T Cell Responses

(2011) Markus B. Geuking et al.   IMMUNITY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Anti TNF-α therapy can be a novel treatment option in patients with autoimmune hepatitis: authors’ reply

(2010) A. D. Yeoman et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Systemic gut microbial modulation of bile acid metabolism in host tissue compartments

(2010) J. R. Swann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Short-chain fatty acids stimulate the migration of neutrophils to inflammatory sites

(2009) Marco A. R. Vinolo et al.   CLINICAL SCIENCE

Butyrate Enhances the Intestinal Barrier by Facilitating Tight Junction Assembly via Activation of AMP-Activated Protein Kinase in Caco-2 Cell Monolayers

(2009) Luying Peng et al.   JOURNAL OF NUTRITION

Simplified criteria for the diagnosis of autoimmune hepatitis

(2008) Elke M. Hennes et al.   HEPATOLOGY