Genome-wide Identification and Expression Analysis of TALE Gene Family in Pomegranate (Punica granatum L.)

Comprehensive analysis of the three-amino-acid-loop-extension gene family and its tissue-differential expression in response to salt stress in poplar

(2019) Kai Zhao et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Land-plant Phylogenomic and Pomegranate Transcriptomic Analyses Reveal an Evolutionary Scenario of CYP75 Genes Subsequent to Whole Genome Duplications

(2019) Taikui Zhang et al.   JOURNAL OF PLANT BIOLOGY

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees

(2019) Balakrishnan Subramanian et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of cherry (Cerasus pseudocerasus G. Don) genes responding to parthenocarpy induced by GA3 through transcriptome analysis

(2019) Binbin Wen et al.   BMC GENETICS

BEL1-like protein (StBEL5) regulates CYCLING DOF FACTOR1 (StCDF1) through tandem TGAC core motifs in potato

(2019) Kirtikumar R. Kondhare et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide identification and characterization of TALE superfamily genes in cotton reveals their functions in regulating secondary cell wall biosynthesis

(2019) Qiang Ma et al.   BMC PLANT BIOLOGY

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

The pomegranate (Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology

(2018) Zhaohe Yuan et al.   PLANT BIOTECHNOLOGY JOURNAL

BEL1-LIKE HOMEODOMAIN 11 regulates chloroplast development and chlorophyll synthesis in tomato fruit

(2018) Lanhuan Meng et al.   PLANT JOURNAL

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

(2017) Gaihua Qin et al.   PLANT JOURNAL

Transcriptomic Analysis Reveals Candidate Genes for Female Sterility in Pomegranate Flowers

(2017) Lina Chen et al.   Frontiers in Plant Science

Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa

(2017) Mercedes Ruiz-Estévez et al.   Genes

A simple method to control over-alignment in the MAFFT multiple sequence alignment program

(2016) Kazutaka Katoh et al.   BIOINFORMATICS

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Homeodomain proteins: an update

(2015) Thomas R. Bürglin et al.   CHROMOSOMA

MYB36 regulates the transition from proliferation to differentiation in theArabidopsisroot

(2015) Louisa M. Liberman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

(2015) Chihiro Furumizu et al.   PLoS Genetics

The transcriptional response of apple alcohol acyltransferase (MdAAT2) to salicylic acid and ethylene is mediated through two apple MYB TFs in transgenic tobacco

(2014) Peng-Cheng Li et al.   PLANT MOLECULAR BIOLOGY

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity

(2014) Ron Ophir et al.   PLoS One

Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development

(2014) Nicolas Arnaud et al.   Frontiers in Plant Science

BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis

(2013) Dachan Kim et al.   PLANT JOURNAL

KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants

(2013) K. Sakakibara et al.   SCIENCE

The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus

(2012) Eryang Li et al.   NEW PHYTOLOGIST

ExPASy: SIB bioinformatics resource portal

(2012) P. Artimo et al.   NUCLEIC ACIDS RESEARCH

The Transcription Factors BEL1 and SPL Are Required for Cytokinin and Auxin Signaling During Ovule Development in Arabidopsis

(2012) S. Bencivenga et al.   PLANT CELL

The mRNA of a Knotted1-like transcription factor of potato is phloem mobile

(2012) Ameya Mahajan et al.   PLANT MOLECULAR BIOLOGY

The Impact of the Long-Distance Transport of a BEL1-Like Messenger RNA on Development

(2012) T. Lin et al.   PLANT PHYSIOLOGY

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF

(2011) Nadia Nicole Ono et al.   Journal of Integrative Plant Biology

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana

(2011) Eryang Li et al.   PLANT JOURNAL

Plant development: A TALE story

(2010) Olivier Hamant et al.   COMPTES RENDUS BIOLOGIES

KNOX genes: versatile regulators of plant development and diversity

(2010) A. Hay et al.   DEVELOPMENT

MYB75 Functions in Regulation of Secondary Cell Wall Formation in the Arabidopsis Inflorescence Stem

(2010) A. Bhargava et al.   PLANT PHYSIOLOGY

A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

(2009) K. Mukherjee et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Shoot apical meristem function in Arabidopsis requires the combined activities of three BEL1-like homeodomain proteins

(2009) Bas Rutjens et al.   PLANT JOURNAL

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana

(2008) Michaela Hundertmark et al.   BMC GENOMICS

ARABIDOPSIS THALIANA HOMEOBOX GENE1 Establishes the Basal Boundaries of Shoot Organs and Controls Stem Growth

(2008) C. Gomez-Mena et al.   PLANT CELL

KNOX Lost the OX: The Arabidopsis KNATM Gene Defines a Novel Class of KNOX Transcriptional Regulators Missing the Homeodomain

(2008) E. Magnani et al.   PLANT CELL

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL