The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Molecular mechanisms of floral organ specification by MADS domain proteins

(2016) Wenhao Yan et al.   CURRENT OPINION IN PLANT BIOLOGY

Urolithin A induces mitophagy and prolongs lifespan in C. elegans and increases muscle function in rodents

(2016) Dongryeol Ryu et al.   NATURE MEDICINE

Cloning and expression of anthocyanin biosynthetic genes in red and white pomegranate

(2015) Xueqing Zhao et al.   JOURNAL OF PLANT RESEARCH

A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity

(2015) Susana Magallón et al.   NEW PHYTOLOGIST

Gene3D: expanding the utility of domain assignments

(2015) Su Datt Lam et al.   NUCLEIC ACIDS RESEARCH

Identification and quantification of major derivatives of ellagic acid and antioxidant properties of thinning and ripe Spanish pomegranates

(2015) Nallely Nuncio-Jáuregui et al.   Journal of Functional Foods

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Variability in the Antioxidant Activity of Dietary Supplements from Pomegranate, Milk Thistle, Green Tea, Grape Seed, Goji, and Acai: Effects of in Vitro Digestion

(2014) Susanne M. Henning et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

HAMAP in 2015: updates to the protein family classification and annotation system

(2014) Ivo Pedruzzi et al.   NUCLEIC ACIDS RESEARCH

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

The complex jujube genome provides insights into fruit tree biology

(2014) Meng-Jun Liu et al.   Nature Communications

Description of urolithin production capacity from ellagic acid of two human intestinal Gordonibacter species

(2014) María V. Selma et al.   Food & Function

Pomegranate Fruit as a Rich Source of Biologically Active Compounds

(2014) Sreeja Sreekumar et al.   Biomed Research International

Ovule development, a new model for lateral organ formation

(2014) Mara Cucinotta et al.   Frontiers in Plant Science

Biological Significance of Urolithins, the Gut Microbial Ellagic Acid-Derived Metabolites: The Evidence So Far

(2013) Juan Carlos Espín et al.   Evidence-based Complementary and Alternative Medicine

The pharmacological use of ellagic acid-rich pomegranate fruit

(2013) Coskun Usta et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

The Ubiquitin Receptor DA1 Interacts with the E3 Ubiquitin Ligase DA2 to Regulate Seed and Organ Size in Arabidopsis

(2013) T. Xia et al.   PLANT CELL

Fruit growth dynamics, respiration rate and physico-textural properties during pomegranate development and ripening

(2013) Olaniyi A. Fawole et al.   SCIENTIA HORTICULTURAE

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

(2012) C. Smaczniak et al.   DEVELOPMENT

Identification of aroma-active compounds in ‘wonderful’ pomegranate fruit using solvent-assisted flavour evaporation and headspace solid-phase micro-extraction methods

(2012) Lina Mayuoni-kirshinbaum et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Diversity, classification and function of the plant protein kinase superfamily

(2012) M. D. Lehti-Shiu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Repression of Floral Meristem Fate Is Crucial in Shaping Tomato Inflorescence

(2012) Johanna Thouet et al.   PLoS One

Changes in physical properties, chemical and elemental composition and antioxidant capacity of pomegranate (cv. Ruby) fruit at five maturity stages

(2012) Olaniyi A. Fawole et al.   SCIENTIA HORTICULTURAE

Pomegranate as a Functional Food and Nutraceutical Source

(2012) Suzanne D. Johanningsmeier et al.   Annual Review of Food Science and Technology

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Evolutionary diversification of the flowers in angiosperms

(2011) P. K. Endress   AMERICAN JOURNAL OF BOTANY

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Angiosperm ovules: diversity, development, evolution

(2011) P. K. Endress   ANNALS OF BOTANY

Identification and quantification of phenolic compounds from pomegranate (Punica granatum L.) peel, mesocarp, aril and differently produced juices by HPLC-DAD–ESI/MSn

(2011) Ulrike A. Fischer et al.   FOOD CHEMISTRY

Ellagitannins, ellagic acid and their derived metabolites: A review about source, metabolism, functions and health

(2011) J.M. Landete   FOOD RESEARCH INTERNATIONAL

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Volatile Composition of Pomegranates from 9 Spanish Cultivars Using Headspace Solid Phase Microextraction

(2011) Pablo Melgarejo et al.   JOURNAL OF FOOD SCIENCE

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Emerging Importance of Type I MADS Box Transcription Factors for Plant Reproduction

(2011) S. Masiero et al.   PLANT CELL

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays

(2010) Diane M Martin et al.   BMC PLANT BIOLOGY

Pomegranate Ellagitannin-Derived Compounds Exhibit Antiproliferative and Antiaromatase Activity in Breast Cancer Cells In vitro

(2010) L. S. Adams et al.   Cancer Prevention Research

Pomegranate and its Many Functional Components as Related to Human Health: A Review

(2010) M. Viuda-Martos et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Colon Cancer Chemopreventive Activities of Pomegranate Ellagitannins and Urolithins

(2010) Sashi G. Kasimsetty et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

The Arabidopsis B-sister MADS-box protein, GORDITA, represses fruit growth and contributes to integument development

(2010) Kalika Prasad et al.   PLANT JOURNAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Interaction between Phenolics and Gut Microbiota: Role in Human Health

(2009) María V. Selma et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

PRGdb: a bioinformatics platform for plant resistance gene analysis

(2009) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation

(2008) Antonio Gonzalez et al.   DEVELOPMENTAL BIOLOGY

Eucalyptus essential oil as a natural pesticide

(2008) Daizy R. Batish et al.   FOREST ECOLOGY AND MANAGEMENT

Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana

(2008) Y. Li et al.   GENES & DEVELOPMENT

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Assessment of the genotoxic risk of Punica granatum L. (Punicaceae) whole fruit extracts

(2007) Angel Sánchez-Lamar et al.   JOURNAL OF ETHNOPHARMACOLOGY