In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis

A TMT-Based Quantitative Proteome Analysis to Elucidate the TSWV Induced Signaling Cascade in Susceptible and Resistant Cultivars of Solanum lycopersicum

(2020) Ravi Gupta et al.   Plants-Basel

A sensitive HPLC-FLD method combined with multivariate analysis for the determination of amino acids in l-citrulline rich vegetables

(2019) Karen A. Corleto et al.   JOURNAL OF FOOD AND DRUG ANALYSIS

Concepts and strategies of soybean seed proteomics using the shotgun proteomics approach

(2019) Cheol Woo Min et al.   Expert Review of Proteomics

Identification of Msp1-Induced Signaling Components in Rice Leaves by Integrated Proteomic and Phosphoproteomic Analysis

(2019) Ravi Gupta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular and functional signatures in a novel Alzheimer’s disease mouse model assessed by quantitative proteomics

(2018) Dong Kyu Kim et al.   Molecular Neurodegeneration

The Metabolic Roles of Free Amino Acids during Seed Development

(2018) Rachel Amir et al.   PLANT SCIENCE

A Multi-Omics Analysis of Glycine max Leaves Reveals Alteration in Flavonoid and Isoflavonoid Metabolism Upon Ethylene and Abscisic Acid Treatment

(2018) Ravi Gupta et al.   PROTEOMICS

Proteome Map of Pea (Pisum sativum L.) Embryos Containing Different Amounts of Residual Chlorophylls

(2018) Tatiana Mamontova et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

In-depth proteomic analysis of Glycine max seeds during controlled deterioration treatment reveals a shift in seed metabolism

(2017) Cheol Woo Min et al.   Journal of Proteomics

Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue

(2017) Deanna L. Plubell et al.   MOLECULAR & CELLULAR PROTEOMICS

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Higher endogenous methionine in transgenic Arabidopsis seeds affects the composition of storage proteins and lipids

(2016) Hagai Cohen et al.   AMINO ACIDS

Global proteome analysis in plants by means of peptide libraries and applications

(2016) Pier Giorgio Righetti et al.   Journal of Proteomics

A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti

(2016) Harald Marx et al.   NATURE BIOTECHNOLOGY

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Role of Ubiquitin-Mediated Degradation System in Plant Biology

(2016) Bhaskar Sharma et al.   Frontiers in Plant Science

Expect the Unexpected Enrichment of “Hidden Proteome” of Seeds and Tubers by Depletion of Storage Proteins

(2016) Ravi Gupta et al.   Frontiers in Plant Science

High-throughput proteome analysis reveals changes of primary metabolism and energy production under artificial aging treatment in Glycine max seeds

(2016) Cheol Woo Min et al.   Applied Biological Chemistry

Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling

(2016) Yangyong Lv et al.   PLoS One

Comparative Biochemical and Proteomic Analyses of Soybean Seed Cultivars Differing in Protein and Oil Content

(2015) Chul Woo Min et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Quantitative Proteogenomics and the Reconstruction of the Metabolic Pathway in Lactobacillus mucosae LM1

(2015) Edward Alain B. Pajarillo et al.   Korean Journal for Food Science of Animal Resources

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis

(2015) Carine Deruyffelaere et al.   PLANT AND CELL PHYSIOLOGY

Proteomic Analysis of Lettuce Seed Germination and Thermoinhibition by Sampling of Individual Seeds at Germination and Removal of Storage Proteins by Polyethylene Glycol Fractionation

(2015) Wei-Qing Wang et al.   PLANT PHYSIOLOGY

Comparative investigation of seed coats of brown- versus yellow-colored soybean seeds using an integrated proteomics and metabolomics approach

(2015) Ravi Gupta et al.   PROTEOMICS

Abundant storage protein depletion from tuber proteins using ethanol precipitation method: Suitability to proteomics study

(2015) Hye Min Lee et al.   PROTEOMICS

Protamine sulfate precipitation method depletes abundant plant seed-storage proteins: A case study on legume plants

(2015) Yu Ji Kim et al.   PROTEOMICS

Physiological implications of arginine metabolism in plants

(2015) Gudrun Winter et al.   Frontiers in Plant Science

Dynamic Metabolic Profiles and Tissue-Specific Source Effects on the Metabolome of Developing Seeds of Brassica napus

(2015) Helin Tan et al.   PLoS One

Methionine and S-methylmethionine exhibit temporal and spatial accumulation patterns during the Arabidopsis life cycle

(2014) Alon Frank et al.   AMINO ACIDS

Plant PRRs and the Activation of Innate Immune Signaling

(2014) Alberto P. Macho et al.   MOLECULAR CELL

Chloroform-Assisted Phenol Extraction Improving Proteome Profiling of Maize Embryos through Selective Depletion of High-Abundance Storage Proteins

(2014) Erhui Xiong et al.   PLoS One

Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation

(2014) Dohyun Han et al.   PROTEOMICS

The role of photosynthesis and amino acid metabolism in the energy status during seed development

(2014) Gad Galili et al.   Frontiers in Plant Science

Protein Analysis by Shotgun/Bottom-up Proteomics

(2013) Yaoyang Zhang et al.   CHEMICAL REVIEWS

Soybean seeds expressing feedback-insensitive cystathionine γ-synthase exhibit a higher content of methionine

(2013) Shikui Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

Depletion of abundant plant RuBisCO protein using the protamine sulfate precipitation method

(2013) Yu Ji Kim et al.   PROTEOMICS

Relationship between asparagine metabolism and protein concentration in soybean seed

(2012) Sudhakar Pandurangan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Looking Deep Inside: Detection of Low-Abundance Proteins in Leaf Extracts of Arabidopsis and Phloem Exudates of Pumpkin

(2012) A. Frohlich et al.   PLANT PHYSIOLOGY

Sequential Extraction Results in Improved Proteome Profiling of Medicinal Plant Pinellia ternata Tubers, Which Contain Large Amounts of High-Abundance Proteins

(2012) XiaoLin Wu et al.   PLoS One

Molecular Design of Seed Storage Proteins for Enhanced Food Physicochemical Properties

(2012) Mary Rose G. Tandang-Silvas et al.   Annual Review of Food Science and Technology

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Current understanding of the factors regulating methionine content in vegetative tissues of higher plants

(2010) Rachel Amir   AMINO ACIDS

The ubiquitin-proteasome system regulates plant hormone signaling

(2010) Aaron Santner et al.   PLANT JOURNAL

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

An efficient extraction method to enhance analysis of low abundant proteins from soybean seed

(2009) Savithiry S. Natarajan et al.   ANALYTICAL BIOCHEMISTRY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

A rapid and simple procedure for the depletion of abundant storage proteins from legume seeds to advance proteome analysis: A case study using Glycine max

(2009) Hari B. Krishnan et al.   PROTEOMICS

Reserve accumulation in legume seeds

(2008) Karine Gallardo et al.   COMPTES RENDUS BIOLOGIES