Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Spatial Compartmentalization of the Microbiome between the Lumen and Crypts Is Lost in the Murine Cecum following the Process of Surgery, Including Overnight Fasting and Exposure to Antibiotics
Authors
Keywords
-
Journal
mSystems
Volume 5, Issue 3, Pages -
Publisher
American Society for Microbiology
Online
2020-06-08
DOI
10.1128/msystems.00377-20
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers
- (2019) Nielson T. Baxter et al. mBio
- Dietary butyrate suppresses inflammation through modulating gut microbiota in high-fat diet-fed mice
- (2019) Shixiang Zhai et al. FEMS MICROBIOLOGY LETTERS
- Mice Fed an Obesogenic Western Diet, Administered Antibiotics, and Subjected to a Sterile Surgical Procedure Develop Lethal Septicemia with Multidrug-Resistant Pathobionts
- (2019) Sanjiv K. Hyoju et al. mBio
- A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome
- (2019) Alessandra Riva et al. Nature Communications
- Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
- (2018) Yugo Tsuchiya et al. BIOCHEMICAL JOURNAL
- Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life
- (2018) Cody S. Sheik et al. Frontiers in Microbiology
- Species-level functional profiling of metagenomes and metatranscriptomes
- (2018) Eric A. Franzosa et al. NATURE METHODS
- The effect of drinking water pH on the human gut microbiota and glucose regulation: results of a randomized controlled cross-over intervention
- (2018) Tue H. Hansen et al. Scientific Reports
- Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product
- (2017) Harry A. Dailey et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Microbiota-activated PPAR-γ signaling inhibits dysbiotic Enterobacteriaceae expansion
- (2017) Mariana X. Byndloss et al. SCIENCE
- Normalization and microbial differential abundance strategies depend upon data characteristics
- (2017) Sophie Weiss et al. Microbiome
- Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri , a Core Member of the Murine Gut Microbiota
- (2017) Alexander Loy et al. mSystems
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations
- (2016) Naseer Sangwan et al. mSystems
- Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes
- (2016) Shoko Iwai et al. PLoS One
- Physiologic hypoxia and oxygen homeostasis in the healthy intestine. A Review in the Theme: Cellular Responses to Hypoxia
- (2015) Leon Zheng et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Ultrastructural study on the morphological changes in indigenous bacteria of mucous layer and chyme throughout the rat intestine
- (2015) Youhei MANTANI et al. JOURNAL OF VETERINARY MEDICAL SCIENCE
- Interdependence of tetrapyrrole metabolism, the generation of oxidative stress and the mitigative oxidative stress response
- (2015) Andrea W.U. Busch et al. Redox Biology
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Beacon-based (bbFISH®) technology for rapid pathogens identification in blood cultures
- (2014) Christina Sakarikou et al. BMC MICROBIOLOGY
- Transcriptomic and biochemical evidence for the role of lysine biosynthesis against linoleic acid hydroperoxide-induced stress inSaccharomyces cerevisiae
- (2014) P. J. O’Doherty et al. FREE RADICAL RESEARCH
- Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
- (2014) Pablo Yarza et al. NATURE REVIEWS MICROBIOLOGY
- Genome-wide analysis of lysine catabolism in bacteria reveals new connections with osmotic stress resistance
- (2013) Izabella AP Neshich et al. ISME Journal
- Differential abundance analysis for microbial marker-gene surveys
- (2013) Joseph N Paulson et al. NATURE METHODS
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- A Crypt-Specific Core Microbiota Resides in the Mouse Colon
- (2012) T. Pedron et al. mBio
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- The Cecal Appendix: One More Immune Component With a Function Disturbed By Post-Industrial Culture
- (2011) Michel Laurin et al. Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started