Systems Biology Approaches to Understanding the Human Immune System
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Systems Biology Approaches to Understanding the Human Immune System
Authors
Keywords
-
Journal
Frontiers in Immunology
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2020-07-30
DOI
10.3389/fimmu.2020.01683
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Blood signatures for second stage human African trypanosomiasis: a transcriptomic approach
- (2020) Julius Mulindwa et al. BMC Medical Genomics
- Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus
- (2020) Yuri Kotliarov et al. NATURE MEDICINE
- Identification of Novel Genes and Biological Pathways That Overlap in Infectious and Nonallergic Diseases of the Upper and Lower Airways Using Network Analyses
- (2020) Erin E. Baschal et al. Frontiers in Genetics
- New markers for sepsis caused by Pseudomonas aeruginosa during burn infection
- (2020) Moamen M. Elmassry et al. Metabolomics
- Immune-profiling of ZIKV-infected patients identifies a distinct function of plasmacytoid dendritic cells for immune cross-regulation
- (2020) Xiaoming Sun et al. Nature Communications
- Network inference in systems biology: recent developments, challenges, and applications
- (2020) Michael M Saint-Antoine et al. CURRENT OPINION IN BIOTECHNOLOGY
- DIABLO: an integrative approach for identifying key molecular drivers from multi-omic assays
- (2019) Amrit Singh et al. BIOINFORMATICS
- Dynamic molecular changes during the first week of human life follow a robust developmental trajectory
- (2019) Amy H. Lee et al. Nature Communications
- NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis
- (2019) Guangyan Zhou et al. NUCLEIC ACIDS RESEARCH
- Immunological Molecular Responses of Human Retinal Pigment Epithelial Cells to Infection With Toxoplasma gondii
- (2019) Shervi Lie et al. Frontiers in Immunology
- Computational approaches in cancer multidrug resistance research: identification of potential biomarkers, drug targets and drug-target interactions
- (2019) A. Tolios et al. DRUG RESISTANCE UPDATES
- BioModels—15 years of sharing computational models in life science
- (2019) Rahuman S Malik-Sheriff et al. NUCLEIC ACIDS RESEARCH
- MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites
- (2018) Samuel J Hinshaw et al. BIOINFORMATICS
- Autophagy in health and disease: A comprehensive review
- (2018) Sarbari Saha et al. BIOMEDICINE & PHARMACOTHERAPY
- Recon3D enables a three-dimensional view of gene variation in human metabolism
- (2018) Elizabeth Brunk et al. NATURE BIOTECHNOLOGY
- Systems biology in hepatology: approaches and applications
- (2018) Adil Mardinoglu et al. Nature Reviews Gastroenterology & Hepatology
- OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space
- (2018) Guangyan Zhou et al. NUCLEIC ACIDS RESEARCH
- Network-based approach to prediction and population-based validation of in silico drug repurposing
- (2018) Feixiong Cheng et al. Nature Communications
- dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data
- (2018) Vân Anh Huynh-Thu et al. Scientific Reports
- ImmPort, toward repurposing of open access immunological assay data for translational and clinical research
- (2018) Sanchita Bhattacharya et al. Scientific Data
- Identification of novel immune-relevant drug target genes for Alzheimer's Disease by combining ontology inference with network analysis
- (2018) Zhi-Jie Han et al. CNS Neuroscience & Therapeutics
- Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer
- (2018) Raquel L. Costa et al. Scientific Reports
- Systems biology primer: the basic methods and approaches
- (2018) Iman Tavassoly et al. Essays in Biochemistry
- PPIExp: A Web-Based Platform for Integration and Visualization of Protein–Protein Interaction Data and Spatiotemporal Proteomics Data
- (2018) Xian Liu et al. JOURNAL OF PROTEOME RESEARCH
- The BioGRID interaction database: 2019 update
- (2018) Rose Oughtred et al. NUCLEIC ACIDS RESEARCH
- Mechanisms of the Innate Defense Regulator Peptide-1002 Anti-Inflammatory Activity in a Sterile Inflammation Mouse Model
- (2017) Bing Catherine Wu et al. JOURNAL OF IMMUNOLOGY
- Innate Control of Adaptive Immunity: Beyond the Three-Signal Paradigm
- (2017) Aakanksha Jain et al. JOURNAL OF IMMUNOLOGY
- Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis
- (2017) Amy T. Y. Yeung et al. Nature Communications
- Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions
- (2017) Edik M. Blais et al. Nature Communications
- ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
- (2016) Guangchuang Yu et al. Molecular BioSystems
- Multi-omic data integration enables discovery of hidden biological regularities
- (2016) Ali Ebrahim et al. Nature Communications
- Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis
- (2016) Feixiong Cheng et al. PLoS Computational Biology
- NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data
- (2015) Jianguo Xia et al. Nature Protocols
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Peptide IDR-1018: modulating the immune system and targeting bacterial biofilms to treat antibiotic-resistant bacterial infections
- (2014) Sarah C. Mansour et al. JOURNAL OF PEPTIDE SCIENCE
- Unifying immunology with informatics and multiscale biology
- (2014) Brian A Kidd et al. NATURE IMMUNOLOGY
- DINIES: drug–target interaction network inference engine based on supervised analysis
- (2014) Yoshihiro Yamanishi et al. NUCLEIC ACIDS RESEARCH
- NetworkAnalyst - integrative approaches for protein–protein interaction network analysis and visual exploration
- (2014) Jianguo Xia et al. NUCLEIC ACIDS RESEARCH
- iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
- (2014) Rekin's Janky et al. PLoS Computational Biology
- A systems framework for vaccine design
- (2013) Michael Mooney et al. CURRENT OPINION IN IMMUNOLOGY
- The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
- (2013) Sandra Orchard et al. NUCLEIC ACIDS RESEARCH
- DrugBank 4.0: shedding new light on drug metabolism
- (2013) Vivian Law et al. NUCLEIC ACIDS RESEARCH
- Therapeutic target database update 2014: a resource for targeted therapeutics
- (2013) Chu Qin et al. NUCLEIC ACIDS RESEARCH
- The Reactome pathway knowledgebase
- (2013) David Croft et al. NUCLEIC ACIDS RESEARCH
- STITCH 4: integration of protein–chemical interactions with user data
- (2013) Michael Kuhn et al. NUCLEIC ACIDS RESEARCH
- Immunological Genome Project and systems immunology
- (2013) Tal Shay et al. TRENDS IN IMMUNOLOGY
- Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures
- (2013) Amir B.K. Foroushani et al. PeerJ
- Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE
- (2012) Yuliang Wang et al. BMC Systems Biology
- Microbiological Analysis of Nontyphoidal Salmonella Strains Causing Distinct Syndromes of Bacteremia or Enteritis in HIV/AIDS Patients in San Diego, California
- (2012) M. J. Preziosi et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Atypical Activation of the Unfolded Protein Response in Cystic Fibrosis Airway Cells Contributes to p38 MAPK-Mediated Innate Immune Responses
- (2012) C. J. Blohmke et al. JOURNAL OF IMMUNOLOGY
- Rescue of Dysfunctional Autophagy Attenuates Hyperinflammatory Responses from Cystic Fibrosis Cells
- (2012) M. L. Mayer et al. JOURNAL OF IMMUNOLOGY
- ENCODE explained
- (2012) Joseph R. Ecker et al. NATURE
- Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
- (2012) Sandra Orchard et al. NATURE METHODS
- InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
- (2012) Karin Breuer et al. NUCLEIC ACIDS RESEARCH
- Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT
- (2012) Rasmus Agren et al. PLoS Computational Biology
- Systems biology approaches to new vaccine development
- (2011) Ann L Oberg et al. CURRENT OPINION IN IMMUNOLOGY
- The Human Transcriptome During Nontyphoid Salmonella and HIV Coinfection Reveals Attenuated NFκB-Mediated Inflammation and Persistent Cell Cycle Disruption
- (2011) Fernanda Schreiber et al. JOURNAL OF INFECTIOUS DISEASES
- Solving vaccine mysteries: a systems biology perspective
- (2011) Lydie Trautmann et al. NATURE IMMUNOLOGY
- MINT, the molecular interaction database: 2012 update
- (2011) Luana Licata et al. NUCLEIC ACIDS RESEARCH
- SuperTarget goes quantitative: update on drug-target interactions
- (2011) N. Hecker et al. NUCLEIC ACIDS RESEARCH
- ChEMBL: a large-scale bioactivity database for drug discovery
- (2011) A. Gaulton et al. NUCLEIC ACIDS RESEARCH
- iMAT: an integrative metabolic analysis tool
- (2010) Hadas Zur et al. BIOINFORMATICS
- Systems Vaccinology
- (2010) Bali Pulendran et al. IMMUNITY
- DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
- (2010) C. Knox et al. NUCLEIC ACIDS RESEARCH
- Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells
- (2009) Neeloffer Mookherjee et al. Molecular BioSystems
- Enabling a systems biology approach to immunology: focus on innate immunity
- (2009) Jennifer L. Gardy et al. TRENDS IN IMMUNOLOGY
- InnateDB: facilitating systems-level analyses of the mammalian innate immune response
- (2008) David J Lynn et al. Molecular Systems Biology
- Network pharmacology: the next paradigm in drug discovery
- (2008) Andrew L Hopkins Nature Chemical Biology
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started