The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research

Thaw Transitions and Redox Conditions Drive Methane Oxidation in a Permafrost Peatland

(2020) Clarice R. Perryman et al.   Journal of Geophysical Research-Biogeosciences

Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research

(2019) Gerhard Rambold et al.   Database-The Journal of Biological Databases and Curation

Optimizing de novo genome assembly from PCR-amplified metagenomes

(2019) Simon Roux et al.   PeerJ

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

(2019) Gareth Trubl et al.   PeerJ

Long‐Term Measurements of Methane Ebullition From Thaw Ponds

(2019) S. A. Burke et al.   Journal of Geophysical Research-Biogeosciences

Climate‐Sensitive Controls on Large Spring Emissions of CH 4 and CO 2 From Northern Lakes

(2019) J. Jansen et al.   Journal of Geophysical Research-Biogeosciences

Methane Production Pathway Regulated Proximally by Substrate Availability and Distally by Temperature in a High‐Latitude Mire Complex

(2019) Kuang‐Yu Chang et al.   Journal of Geophysical Research-Biogeosciences

Post-thaw variability in litter decomposition best explained by microtopography at an ice-rich permafrost peatland

(2018) Avni Malhotra et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

Methanotrophy across a natural permafrost thaw environment

(2018) Caitlin M Singleton et al.   ISME Journal

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Sediment characteristics and methane ebullition in three subarctic lakes

(2018) Martin Wik et al.   Journal of Geophysical Research-Biogeosciences

Advanced Molecular Techniques Provide New Rigorous Tools for Characterizing Organic Matter Quality in Complex Systems

(2018) Rachel M. Wilson et al.   Journal of Geophysical Research-Biogeosciences

Host-linked soil viral ecology along a permafrost thaw gradient

(2018) Joanne B. Emerson et al.   Nature Microbiology

Genome-centric view of carbon processing in thawing permafrost

(2018) Ben J. Woodcroft et al.   NATURE

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance

(2018) Suzanne B. Hodgkins et al.   Nature Communications

Determining Subarctic Peatland Vegetation Using an Unmanned Aerial System (UAS)

(2018) Michael Palace et al.   Remote Sensing

GeneLab: Omics database for spaceflight experiments

(2018) Shayoni Ray et al.   BIOINFORMATICS

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.

(2018) Miguel A. Martinez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

(2018) Gareth Trubl et al.   mSystems

Microbial network, phylogenetic diversity and community membership in the active layer across a permafrost thaw gradient

(2017) Rhiannon Mondav et al.   ENVIRONMENTAL MICROBIOLOGY

Hydrogenation of organic matter as a terminal electron sink sustains high CO 2 :CH 4 production ratios during anaerobic decomposition

(2017) Rachel M. Wilson et al.   ORGANIC GEOCHEMISTRY

Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling

(2017) Jia Deng et al.   Journal of Advances in Modeling Earth Systems

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis

(2017) Raquel L. Costa et al.   PeerJ

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

(2016) Claudia Manzoni et al.   BRIEFINGS IN BIOINFORMATICS

Historical foundations and future directions in macrosystems ecology

(2016) Kevin C. Rose et al.   ECOLOGY LETTERS

Elemental composition and optical properties reveal changes in dissolved organic matter along a permafrost thaw chronosequence in a subarctic peatland

(2016) Suzanne B. Hodgkins et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

(2016) Pier Luigi Buttigieg et al.   Journal of Biomedical Semantics

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

(2016) Gareth Trubl et al.   PeerJ

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Soil incubations reproduce field methane dynamics in a subarctic wetland

(2015) Suzanne B. Hodgkins et al.   BIOGEOCHEMISTRY

Macrosystems ecology: novel methods and new understanding of multi-scale patterns and processes

(2015) Songlin Fei et al.   LANDSCAPE ECOLOGY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Macrosystems ecology: understanding ecological patterns and processes at continental scales

(2014) James B Heffernan et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Methane dynamics regulated by microbial community response to permafrost thaw

(2014) Carmody K. McCalley et al.   NATURE

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production

(2014) S. B. Hodgkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of a novel methanogen prevalent in thawing permafrost

(2014) Rhiannon Mondav et al.   Nature Communications

The environment ontology: contextualising biological and biomedical entities

(2013) Pier Buttigieg et al.   Journal of Biomedical Semantics

Multiyear measurements of ebullitive methane flux from three subarctic lakes

(2013) Martin Wik et al.   Journal of Geophysical Research-Biogeosciences

The Man, the Myth, the Legend: Professor Terry V. Callaghan and His 3M Concept

(2012) Margareta Johansson et al.   AMBIO

Environmental Monitoring and Research in the Abisko Area—An Overview

(2012) Christer Jonasson et al.   AMBIO

Comparison of dialysis and solid-phase extraction for isolation and concentration of dissolved organic matter prior to Fourier transform ion cyclotron resonance mass spectrometry

(2012) Malak M. Tfaily et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Behavior of Reoccurring PARAFAC Components in Fluorescent Dissolved Organic Matter in Natural and Engineered Systems: A Critical Review

(2012) Stephanie K. L. Ishii et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Toward interoperable bioscience data

(2012) Susanna-Assunta Sansone et al.   NATURE GENETICS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Ecoinformatics: supporting ecology as a data-intensive science

(2012) William K. Michener et al.   TRENDS IN ECOLOGY & EVOLUTION

An appraisal of megascience platforms for biodiversity information

(2012) Dagmar Triebel et al.   MycoKeys

MGV: a generic graph viewer for comparative omics data

(2011) Stephan Symons et al.   BIOINFORMATICS

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

A new climate era in the sub-Arctic: Accelerating climate changes and multiple impacts

(2010) Terry V. Callaghan et al.   GEOPHYSICAL RESEARCH LETTERS

Annual cycle of methane emission from a subarctic peatland

(2010) Marcin Jackowicz-Korczyński et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Wetland development, permafrost history and nutrient cycling inferred from late Holocene peat and lake sediment records in subarctic Sweden

(2010) Ulla Kokfelt et al.   JOURNAL OF PALEOLIMNOLOGY

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

A mathematical framework for earth science data provenance tracing

(2010) Bruce R. Barkstrom   Earth Science Informatics

MIMAS 3.0 is a Multiomics Information Management and Annotation System

(2009) Alexandre Gattiker et al.   BMC BIOINFORMATICS

Ecosystem responses to increased precipitation and permafrost decay in subarctic Sweden inferred from peat and lake sediments

(2009) U. KOKFELT et al.   GLOBAL CHANGE BIOLOGY

Living in an increasingly connected world: a framework for continental-scale environmental science

(2008) Debra PC Peters et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Total hydrocarbon flux dynamics at a subarctic mire in northern Sweden

(2008) Kristina Bäckstrand et al.   JOURNAL OF GEOPHYSICAL RESEARCH

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

Non-methane volatile organic compound flux from a subarctic mire in Northern Sweden

(2008) Kristina Bäckstrand et al.   TELLUS SERIES B-CHEMICAL AND PHYSICAL METEOROLOGY