Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

Illuminating structural proteins in viral “dark matter” with metaproteomics

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Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat

(2016) Flore Ballaud et al.   Frontiers in Microbiology

An Inexpensive, Accurate, and Precise Wet-Mount Method for Enumerating Aquatic Viruses

(2015) Brady R. Cunningham et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Permafrost collapse alters soil carbon stocks, respiration, CH4, and N2O in upland tundra

(2015) Benjamin W. Abbott et al.   GLOBAL CHANGE BIOLOGY

Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton

(2015) Jessica M Labonté et al.   ISME Journal

Climate change and the permafrost carbon feedback

(2015) E. A. G. Schuur et al.   NATURE

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

Rising to the challenge: accelerated pace of discovery transforms marine virology

(2015) Jennifer R. Brum et al.   NATURE REVIEWS MICROBIOLOGY

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

(2015) Simon Roux et al.   eLife

Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands

(2015) Achim Quaiser et al.   Frontiers in Microbiology

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity

(2014) Evelien M. Adriaenssens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome

(2014) Bonnie L Hurwitz et al.   ISME Journal

Methane dynamics regulated by microbial community response to permafrost thaw

(2014) Carmody K. McCalley et al.   NATURE

The microbial ecology of permafrost

(2014) Janet K. Jansson et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Functional Potential and Community Composition in Permafrost-Affected Soils of the NW Canadian Arctic

(2014) Béatrice A. Frank-Fahle et al.   PLoS One

Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production

(2014) S. B. Hodgkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfur Oxidation Genes in Diverse Deep-Sea Viruses

(2014) K. Anantharaman et al.   SCIENCE

Discovery of a novel methanogen prevalent in thawing permafrost

(2014) Rhiannon Mondav et al.   Nature Communications

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

(2014) Simon Roux et al.   eLife

Emerging methods to study bacteriophage infection at the single-cell level

(2014) Vinh T. Dang et al.   Frontiers in Microbiology

Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods

(2013) Kurt E. Williamson et al.   BIOLOGY AND FERTILITY OF SOILS

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

(2013) Jennifer R Brum et al.   ISME Journal

Diagnosing Present and Future Permafrost from Climate Models

(2013) Andrew G. Slater et al.   JOURNAL OF CLIMATE

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

Long-term CO2 production following permafrost thaw

(2013) Bo Elberling et al.   Nature Climate Change

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

(2012) Bonnie L. Hurwitz et al.   ENVIRONMENTAL MICROBIOLOGY

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

(2012) Melissa B. Duhaime et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Fake virus particles generated by fluorescence microscopy

(2012) Patrick Forterre et al.   TRENDS IN MICROBIOLOGY

Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging

(2012) L. Deng et al.   mBio

VIROME: a standard operating procedure for analysis of viral metagenome sequences

(2012) K. Eric Wommack et al.   Standards in Genomic Sciences

Microbes in thawing permafrost: the unknown variable in the climate change equation

(2011) David E Graham et al.   ISME Journal

Bias in bacteriophage morphological classification by transmission electron microscopy due to breakage or loss of tail structures

(2011) Kurt E. Williamson et al.   MICROSCOPY RESEARCH AND TECHNIQUE

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Molecular characterization of Legionella pneumophila-induced interleukin-8 expression in T cells

(2010) Reika Takamatsu et al.   BMC MICROBIOLOGY

Isoelectric points of viruses

(2010) B. Michen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Viruses in soils: morphological diversity and abundance in the rhizosphere

(2009) M.M. Swanson et al.   ANNALS OF APPLIED BIOLOGY

Soil organic carbon pools in the northern circumpolar permafrost region

(2009) C. Tarnocai et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

(2009) Dana Willner et al.   PLoS One

Phages across the biosphere: contrasts of viruses in soil and aquatic environments

(2008) Sharath Srinivasiah et al.   RESEARCH IN MICROBIOLOGY