Assembly methods for nanopore-based metagenomic sequencing: a comparative study
Published 2020 View Full Article
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Title
Assembly methods for nanopore-based metagenomic sequencing: a comparative study
Authors
Keywords
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Journal
Scientific Reports
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-08-12
DOI
10.1038/s41598-020-70491-3
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- (2018) Justus Hardegen et al. BIORESOURCE TECHNOLOGY
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