Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis

Dynamics of biogenic amines and bacterial communities in a Thai fermented pork product Nham

(2019) Pannita Santiyanont et al.   FOOD RESEARCH INTERNATIONAL

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

(2018) Jongsik Chun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements

(2018) Xiaobin Li et al.   NUCLEIC ACIDS RESEARCH

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

(2018) Bo Liu et al.   NUCLEIC ACIDS RESEARCH

ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences

(2017) Imchang Lee et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

D-lactic acidosis in humans: systematic literature review

(2017) Davide G. A. M. Bianchetti et al.   PEDIATRIC NEPHROLOGY

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases

(2017) Komwit Surachat et al.   PLoS One

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

A Structure-Based Classification of Class A β-Lactamases, a Broadly Diverse Family of Enzymes

(2015) Alain Philippon et al.   CLINICAL MICROBIOLOGY REVIEWS

Determining the safety of microbial cultures for consumption by humans and animals

(2015) Michael W. Pariza et al.   REGULATORY TOXICOLOGY AND PHARMACOLOGY

Feasibility of Genome-Wide Screening for Biosafety Assessment of Probiotics: A Case Study of Lactobacillus helveticus MTCC 5463

(2015) S. Senan et al.   Probiotics and Antimicrobial Proteins

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Safety assessment of Lactobacillus plantarum JDM1 based on the complete genome

(2011) Zhuo-Yang Zhang et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The safety ofBacillus subtilisandBacillus indicusas food probiotics

(2008) H.A. Hong et al.   JOURNAL OF APPLIED MICROBIOLOGY