In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases

Characterization of biosurfactants produced by Lactobacillus spp. and their activity against oral streptococci biofilm

(2016) Eleonora Ciandrini et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Interactions between Lactobacillus rhamnosus GG and oral micro-organisms in an in vitro biofilm model

(2016) Qingru Jiang et al.   BMC MICROBIOLOGY

RaptorX-Property: a web server for protein structure property prediction

(2016) Sheng Wang et al.   NUCLEIC ACIDS RESEARCH

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

(2015) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

I-TASSER server: new development for protein structure and function predictions

(2015) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on

(2015) Lihong Chen et al.   NUCLEIC ACIDS RESEARCH

Feasibility of Genome-Wide Screening for Biosafety Assessment of Probiotics: A Case Study of Lactobacillus helveticus MTCC 5463

(2015) S. Senan et al.   Probiotics and Antimicrobial Proteins

Screening of Probiotic Candidates in Human Oral Bacteria for the Prevention of Dental Disease

(2015) Tomohiko Terai et al.   PLoS One

The Effect of Lactobacillus casei 32G on the Mouse Cecum Microbiota and Innate Immune Response Is Dose and Time Dependent

(2015) Busra Aktas et al.   PLoS One

Purification and characterization of bacteriocin produced by oral Lactobacillus paracasei SD1

(2014) P. Wannun et al.   ANAEROBE

Circular Bacteriocins: Biosynthesis and Mode of Action

(2014) Christina Gabrielsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lactobacillus rhamnosus GG in the middle ear after randomized, double-blind, placebo-controlled oral administration

(2014) Laura Tapiovaara et al.   INTERNATIONAL JOURNAL OF PEDIATRIC OTORHINOLARYNGOLOGY

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Oral administration of Lactobacillus paracasei alleviates clinical symptoms of colitis induced by dextran sulphate sodium salt in BALB/c mice

(2014) T. Pan et al.   Beneficial Microbes

Lactobacillus surface layer proteins: structure, function and applications

(2013) Ulla Hynönen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of Probiotics Containing Lactobacillus paracasei SD1 on Salivary Mutans Streptococci and Lactobacilli in Orthodontic Cleft Patients: A Double-Blinded, Randomized, Placebo-Controlled Study

(2013) Wipapun Ritthagol et al.   CLEFT PALATE-CRANIOFACIAL JOURNAL

Lactobacillus paracasei SD1, a novel probiotic, reduces mutans streptococci in human volunteers: a randomized placebo-controlled trial

(2013) Rawee Teanpaisan et al.   Clinical Oral Investigations

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Gassericin A: a circular bacteriocin produced by Lactic acid bacteria Lactobacillus gasseri

(2013) Neha Pandey et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Food preservative potential of gassericin A-containing concentrate prepared from cheese whey culture supernatant ofLactobacillus gasseriLA39

(2012) Kiyoshi NAKAMURA et al.   ANIMAL SCIENCE JOURNAL

Characterization of putative class II bacteriocins identified from a non-bacteriocin-producing strain Lactobacillus casei ATCC 334

(2012) Yang-Cheng Kuo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The immunomodulatory effects of lactic acid bacteria for improving immune functions and benefits

(2012) Yueh-Ting Tsai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Safety of a probiotic cheese containing Lactobacillus plantarum Tensia according to a variety of health indices in different age groups

(2012) E. Songisepp et al.   JOURNAL OF DAIRY SCIENCE

Template-based protein structure modeling using the RaptorX web server

(2012) Morten Källberg et al.   Nature Protocols

Safety assessment of Lactobacillus plantarum JDM1 based on the complete genome

(2011) Zhuo-Yang Zhang et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Protein expression vector and secretion signal peptide optimization to drive the production, secretion, and functional expression of the bacteriocin enterocin A in lactic acid bacteria

(2011) Juan Borrero et al.   JOURNAL OF BIOTECHNOLOGY

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors

(2011) L. Chen et al.   NUCLEIC ACIDS RESEARCH

DBETH: A Database of Bacterial Exotoxins for Human

(2011) Abhijit Chakraborty et al.   NUCLEIC ACIDS RESEARCH

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria

(2011) Dexi Bi et al.   NUCLEIC ACIDS RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Raptorx: Exploiting structure information for protein alignment by statistical inference

(2011) Jian Peng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Enterocin X, a Novel Two-Peptide Bacteriocin from Enterococcus faecium KU-B5, Has an Antibacterial Spectrum Entirely Different from Those of Its Component Peptides

(2010) C.-B. Hu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BACTIBASE second release: a database and tool platform for bacteriocin characterization

(2010) Riadh Hammami et al.   BMC MICROBIOLOGY

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Conjugative Plasmid from Lactobacillus gasseri LA39 That Carries Genes for Production of and Immunity to the Circular Bacteriocin Gassericin A

(2009) Y. Ito et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Targeting the Human Microbiome With Antibiotics, Probiotics, and Prebiotics: Gastroenterology Enters the Metagenomics Era

(2009) Geoffrey A. Preidis et al.   GASTROENTEROLOGY

Genome Sequence and Comparative Genome Analysis of Lactobacillus casei: Insights into Their Niche-Associated Evolution

(2009) Hui Cai et al.   Genome Biology and Evolution

Gastrointestinal microflora, food components and colon cancer prevention

(2009) Cindy D. Davis et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Functional and Probiotic Attributes of an Indigenous Isolate of Lactobacillus plantarum

(2009) Jai K. Kaushik et al.   PLoS One

I-TASSER: Fully automated protein structure prediction in CASP8

(2009) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prospects for the development of probiotics and prebiotics for oral applications

(2009) Deirdre A. Devine et al.   Journal of Oral Microbiology

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Effect of Ferric Iron on Siderophore Production and Pyrene Degradation by Pseudomonas fluorescens 29L

(2008) Saleha Husain   CURRENT MICROBIOLOGY

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH