Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

Latrophilin GPCRs direct synapse specificity by coincident binding of FLRTs and teneurins

(2019) Richard Sando et al.   SCIENCE

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming

(2019) Geoffrey Schiebinger et al.   CELL

Immune Signaling in Neurodegeneration

(2019) Timothy R. Hammond et al.   IMMUNITY

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification

(2019) Brian S. Clark et al.   NEURON

Alternative splicing of neuronal genes: new mechanisms and new therapies

(2019) Diane Lipscombe et al.   CURRENT OPINION IN NEUROBIOLOGY

Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs

(2019) Elisabetta Furlanis et al.   NATURE NEUROSCIENCE

Regulation of Neuronal Differentiation, Function, and Plasticity by Alternative Splicing

(2018) Elisabetta Furlanis et al.   Annual Review of Cell and Developmental Biology

A clinical and molecular characterisation of CRB1-associated maculopathy

(2018) Kamron N. Khan et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

(2018) Manuel Tardaguila et al.   GENOME RESEARCH

Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments

(2018) Georgi Tushev et al.   NEURON

Abnormal Cell Sorting Underlies the Unique X-Linked Inheritance of PCDH19 Epilepsy

(2018) Daniel T. Pederick et al.   NEURON

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells

(2018) Ishaan Gupta et al.   NATURE BIOTECHNOLOGY

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder

(2018) Michael J. Gandal et al.   SCIENCE

A Novel Ultrasensitive In Situ Hybridization Approach to Detect Short Sequences and Splice Variants with Cellular Resolution

(2017) Larissa Erben et al.   MOLECULAR NEUROBIOLOGY

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

(2017) Julien Lagarde et al.   NATURE GENETICS

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis

(2017) Issam Aldiri et al.   NEURON

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues

(2017) Alejandro Reyes et al.   NUCLEIC ACIDS RESEARCH

The Encyclopedia of DNA elements (ENCODE): data portal update

(2017) Carrie A Davis et al.   NUCLEIC ACIDS RESEARCH

The CRB1 Complex: Following the Trail of Crumbs to a Feasible Gene Therapy Strategy

(2017) Peter M. Quinn et al.   Frontiers in Neuroscience

Improved definition of the mouse transcriptome via targeted RNA sequencing

(2016) Giovanni Bussotti et al.   GENOME RESEARCH

Distal Alternative Last Exons Localize mRNAs to Neural Projections

(2016) J. Matthew Taliaferro et al.   MOLECULAR CELL

Decoding ALS: from genes to mechanism

(2016) J. Paul Taylor et al.   NATURE

Glia–neuron interactions in the mammalian retina

(2016) Elena Vecino et al.   PROGRESS IN RETINAL AND EYE RESEARCH

RNA splicing is a primary link between genetic variation and disease

(2016) Yang I. Li et al.   SCIENCE

Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions

(2015) Rotem Rubinstein et al.   CELL

Beyond Molecular Codes: Simple Rules to Wire Complex Brains

(2015) Bassem A. Hassan et al.   CELL

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

(2015) Michael B Clark et al.   NATURE METHODS

Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles

(2015) Bushra Raj et al.   NEURON

An effective plasma membrane proteomics approach for small tissue samples

(2015) Katrien Smolders et al.   Scientific Reports

Splicing-Dependent Trans-synaptic SALM3–LAR-RPTP Interactions Regulate Excitatory Synapse Development and Locomotion

(2015) Yan Li et al.   Cell Reports

Retinal transcriptome profiling at transcription start sites: a cap analysis of gene expression early after axonal injury

(2014) Masayuki Yasuda et al.   BMC GENOMICS

The severity of retinal pathology in homozygous Crb1rd8/rd8 mice is dependent on additional genetic factors

(2014) Ulrich F.O. Luhmann et al.   HUMAN MOLECULAR GENETICS

Comprehensive analysis of gene expression in human retina and supporting tissues

(2014) Mingyao Li et al.   HUMAN MOLECULAR GENETICS

Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins

(2014) Dietmar Schreiner et al.   NEURON

Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing

(2014) Barbara Treutlein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clustered protocadherins

(2013) W. V. Chen et al.   DEVELOPMENT

Sticking together the Crumbs — an unexpected function for an old friend

(2013) Barry J. Thompson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Characterization of the human ESC transcriptome by hybrid sequencing

(2013) K. F. Au et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein tyrosine phosphatases PTPδ, PTPσ, and LAR: presynaptic hubs for synapse organization

(2013) Hideto Takahashi et al.   TRENDS IN NEUROSCIENCES

CRB1: One Gene, Many Phenotypes

(2013) Miriam Ehrenberg et al.   Seminars in Ophthalmology

MEGF10 and MEGF11 mediate homotypic interactions required for mosaic spacing of retinal neurons

(2012) Jeremy N. Kay et al.   NATURE

Negative regulation of glial engulfment activity by Draper terminates glial responses to axon injury

(2012) Mary A Logan et al.   NATURE NEUROSCIENCE

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

(2011) Tim R Mercer et al.   NATURE BIOTECHNOLOGY

Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease

(2011) Adam C Naj et al.   NATURE GENETICS

Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease

(2011) Paul Hollingworth et al.   NATURE GENETICS

Chemoaffinity Revisited: Dscams, Protocadherins, and Neural Circuit Assembly

(2010) S. Lawrence Zipursky et al.   CELL

Transducin  -Subunit Sets Expression Levels of  - and  -Subunits and Is Crucial for Rod Viability

(2008) E. S. Lobanova et al.   JOURNAL OF NEUROSCIENCE

Neuroligins and neurexins link synaptic function to cognitive disease

(2008) Thomas C. Südhof   NATURE