Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-06-04
DOI
10.1038/s41467-020-16485-1
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Physiological and Genetic Adaptations to Diving in Sea Nomads
- (2018) Melissa A. Ilardo et al. CELL
- Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds
- (2018) Marina Naval-Sanchez et al. Nature Communications
- Convergent genomic signatures of domestication in sheep and goats
- (2018) Florian J. Alberto et al. Nature Communications
- Genome-Wide Association Analyses Highlight the Potential for Different Genetic Mechanisms for Litter Size Among Sheep Breeds
- (2018) Song-Song Xu et al. Frontiers in Genetics
- Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB
- (2018) Zhi-Liang Hu et al. NUCLEIC ACIDS RESEARCH
- Exploring evidence of positive selection signatures in cattle breeds selected for different traits
- (2017) Mengistie Taye et al. MAMMALIAN GENOME
- Genomic Reconstruction of the History of Native Sheep Reveals the Peopling Patterns of Nomads and the Expansion of Early Pastoralism in East Asia
- (2017) Yong-Xin Zhao et al. MOLECULAR BIOLOGY AND EVOLUTION
- Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits
- (2017) Rajeev K Varshney et al. NATURE GENETICS
- Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks
- (2017) Ivica Medugorac et al. NATURE GENETICS
- Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans
- (2017) Chuan Gao et al. Obesity
- Loci associated with skin pigmentation identified in African populations
- (2017) Nicholas G. Crawford et al. SCIENCE
- Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
- (2017) Daniel C. Jeffares et al. Nature Communications
- Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs
- (2017) Bridgett M. vonHoldt et al. Science Advances
- Biallelicβ-carotene oxygenase 2knockout results in yellow fat in sheep via CRISPR/Cas9
- (2016) Y. Niu et al. ANIMAL GENETICS
- Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments
- (2016) Ji Yang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic analyses inform on migration events during the peopling of Eurasia
- (2016) Luca Pagani et al. NATURE
- Domestication history and geographical adaptation inferred from a SNP map of African rice
- (2016) Rachel S Meyer et al. NATURE GENETICS
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
- (2016) Mihaela Pertea et al. Nature Protocols
- Whole-genome scanning for the litter size trait associated genes and SNPs under selection in dairy goat (Capra hircus)
- (2016) Fang-Nong Lai et al. Scientific Reports
- Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
- (2015) Xiaoyu Chen et al. BIOINFORMATICS
- Association of a genetic marker at the bovine Janus kinase 2 locus (JAK2/RsaI) with milk production traits of four cattle breeds
- (2015) Małgorzata Szewczuk JOURNAL OF DAIRY RESEARCH
- Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
- (2015) Zhengkui Zhou et al. NATURE BIOTECHNOLOGY
- Molecular DNA identity of the mouflon of Cyprus (Ovis orientalis ophion, Bovidae): Near Eastern origin and divergence from Western Mediterranean conspecific populations
- (2015) Monica Guerrini et al. SYSTEMATICS AND BIODIVERSITY
- Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions
- (2015) Qiang Qiu et al. Nature Communications
- SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data
- (2015) Mario Barbato et al. Frontiers in Genetics
- Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals
- (2014) Anthony Youzhi Cheng et al. BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection
- (2014) Z. A. Szpiech et al. MOLECULAR BIOLOGY AND EVOLUTION
- Adaptations to Climate-Mediated Selective Pressures in Sheep
- (2014) Feng-Hua Lv et al. MOLECULAR BIOLOGY AND EVOLUTION
- Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
- (2014) Hans D Daetwyler et al. NATURE GENETICS
- Genome-Wide Association Study for Wool Production Traits in a Chinese Merino Sheep Population
- (2014) Zhipeng Wang et al. PLoS One
- The sheep genome illuminates biology of the rumen and lipid metabolism
- (2014) Y. Jiang et al. SCIENCE
- Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
- (2014) M. Carneiro et al. SCIENCE
- Multiple hypothesis testing in genomics
- (2014) Jelle J. Goeman et al. STATISTICS IN MEDICINE
- How Much Is That in Dog Years? The Advent of Canine Population Genomics
- (2014) Greger Larson et al. PLoS Genetics
- SLIT/ROBO2 Signaling Promotes Mammary Stem Cell Senescence by Inhibiting Wnt Signaling
- (2014) Gwyndolen Harburg et al. Stem Cell Reports
- Gli Activity Is Critical at Multiple Stages of Embryonic Mammary and Nipple Development
- (2013) Anupama Chandramouli et al. PLoS One
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- Adipogenesis
- (2012) K. Sarjeant et al. Cold Spring Harbor Perspectives in Biology
- Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection
- (2012) James W. Kijas et al. PLOS BIOLOGY
- A whole-genome association study for pig reproductive traits
- (2011) S. K. Onteru et al. ANIMAL GENETICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- PDGFRβ Signaling Regulates Mural Cell Plasticity and Inhibits Fat Development
- (2011) Lorin E. Olson et al. DEVELOPMENTAL CELL
- CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- (2011) A. Abyzov et al. GENOME RESEARCH
- Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population
- (2011) SUSAN E. JOHNSTON et al. MOLECULAR ECOLOGY
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Repressor transcription factor 7-like 1 promotes adipogenic competency in precursor cells
- (2011) A. G. Cristancho et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Population differentiation as a test for selective sweeps
- (2010) H. Chen et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
- Whole-genome resequencing reveals loci under selection during chicken domestication
- (2010) Carl-Johan Rubin et al. NATURE
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- Animal evolution during domestication: the domesticated fox as a model
- (2009) Lyudmila Trut et al. BIOESSAYS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Involvement of the SLIT/ROBO pathway in follicle development in the fetal ovary
- (2009) Rachel E Dickinson et al. REPRODUCTION
- The genomic basis of the Williams – Beuren syndrome
- (2008) C. Schubert CELLULAR AND MOLECULAR LIFE SCIENCES
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now