Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?
Authors
Keywords
Soil ecology, Fungi, Specimen storage, Archives, Prokaryotic cells, Poplars, Fungal pathogens, Microbial ecology
Journal
PLoS One
Volume 15, Issue 8, Pages e0237368
Publisher
Public Library of Science (PLoS)
Online
2020-08-12
DOI
10.1371/journal.pone.0237368
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- High proportions of bacteria and archaea across most biomes remain uncultured
- (2019) Andrew D. Steen et al. ISME Journal
- Consistent and correctable bias in metagenomic sequencing experiments
- (2019) Michael R McLaren et al. eLife
- Microbial communities associated with the black morel Morchella sextelata cultivated in greenhouses
- (2019) Gian Maria Niccolò Benucci et al. PeerJ
- Variation in soybean rhizosphere oomycete communities from Michigan fields with contrasting disease pressures
- (2019) Zachary A. Noel et al. APPLIED SOIL ECOLOGY
- Factors governing extracellular DNA degradation dynamics in soil
- (2018) Sara Hope Sirois et al. Environmental Microbiology Reports
- Revegetation rewilds the soil bacterial microbiome of an old field
- (2017) Nicholas J. C. Gellie et al. MOLECULAR ECOLOGY
- The preservation of microbial DNA in archived soils of various genetic types
- (2017) Ekaterina A. Ivanova et al. PLoS One
- Normalization and microbial differential abundance strategies depend upon data characteristics
- (2017) Sophie Weiss et al. Microbiome
- FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
- (2016) Nhu H. Nguyen et al. Fungal Ecology
- codyn: Anrpackage of community dynamics metrics
- (2016) Lauren M. Hallett et al. Methods in Ecology and Evolution
- Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
- (2016) Paul Carini et al. Nature Microbiology
- Error filtering, pair assembly and error correction for next-generation sequencing reads
- (2015) Robert C. Edgar et al. BIOINFORMATICS
- Soil fungal communities respond compositionally to recurring frequent prescribed burning in a managed southeastern US forest ecosystem
- (2015) Alena K. Oliver et al. FOREST ECOLOGY AND MANAGEMENT
- Evaluation of soil storage methods for soil microbial community using genetic and metabolic fingerprintings
- (2014) Hang Cui et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects
- (2014) NICOLAS J. RAWLENCE et al. JOURNAL OF QUATERNARY SCIENCE
- The importance of sample archiving in microbial ecology
- (2014) S. Craig Cary et al. NATURE REVIEWS MICROBIOLOGY
- Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests
- (2014) Karina E. Clemmensen et al. NEW PHYTOLOGIST
- Spatial Ecology of Bacteria at the Microscale in Soil
- (2014) Xavier Raynaud et al. PLoS One
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- PEAR: a fast and accurate Illumina Paired-End reAd mergeR
- (2013) J. Zhang et al. BIOINFORMATICS
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
- (2013) Björn D. Lindahl et al. NEW PHYTOLOGIST
- Investigating the Impact of Storage Conditions on Microbial Community Composition in Soil Samples
- (2013) Benjamin E. R. Rubin et al. PLoS One
- Considerations in the storage of soil samples for enzyme activity analysis
- (2012) Matthew S. Peoples et al. APPLIED SOIL ECOLOGY
- The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
- (2012) Daniel McDonald et al. GigaScience
- Fungal spores: Dormancy, germination, chemical composition, and role in biotechnology (review)
- (2011) E. P. Feofilova et al. APPLIED BIOCHEMISTRY AND MICROBIOLOGY
- Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
- (2010) Christian L. Lauber et al. FEMS MICROBIOLOGY LETTERS
- Sample storage for soil enzyme activity and bacterial community profiles
- (2010) K. Wallenius et al. JOURNAL OF MICROBIOLOGICAL METHODS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Improving indicator species analysis by combining groups of sites
- (2010) Miquel De Cáceres et al. OIKOS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dormancy contributes to the maintenance of microbial diversity
- (2010) S. E. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Extracellular DNA in soil and sediment: fate and ecological relevance
- (2008) G. Pietramellara et al. BIOLOGY AND FERTILITY OF SOILS
- Inoculum potential of Rhizopogon spores increases with time over the first 4 yr of a 99-yr spore burial experiment
- (2008) Thomas D. Bruns et al. NEW PHYTOLOGIST
- Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity
- (2008) Vesela A. Tzeneva et al. RESEARCH IN MICROBIOLOGY
- Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment
- (2008) Ian M. Clark et al. SOIL BIOLOGY & BIOCHEMISTRY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started