Microbial communities associated with the black morel Morchella sextelata cultivated in greenhouses

Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum

(2019) Richard Splivallo et al.   Frontiers in Microbiology

Screening of endofungal bacteria isolated from wild growing mushrooms as potential biological control agents against brown blotch and internal stipe necrosis diseases of Agaricus bisporus

(2018) Mohammad Ali Aslani et al.   BIOLOGICAL CONTROL

RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi

(2018) Ko-Hsuan Chen et al.   NEW PHYTOLOGIST

Effect of fruiting body bacteria on the growth of Tricholoma matsutake and its related molds

(2018) Seung-Yoon Oh et al.   PLoS One

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

(2018) Jonathan M. Palmer et al.   PeerJ

Microbial and pigment profile of the reddish patch occurring within Tuber magnatum ascomata

(2018) Antonella Amicucci et al.   Fungal Biology

Bacterial diversity among the fruit bodies of ectomycorrhizal and saprophytic fungi and their corresponding hyphosphere soils

(2018) Yaping Liu et al.   Scientific Reports

Cultivable microbiome of fresh white button mushrooms

(2017) W. Rossouw et al.   LETTERS IN APPLIED MICROBIOLOGY

Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity

(2017) Mari Pent et al.   Frontiers in Microbiology

Effects of element complexes containing Fe, Zn and Mn on artificial morel’s biological characteristics and soil bacterial community structures

(2017) Qingya Liu et al.   PLoS One

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales

(2016) Gian Maria Niccolò Benucci et al.   MICROBIAL ECOLOGY

First Report of Stipe Rot Disease on Morchella importuna Caused by Fusarium incarnatum – F. equiseti Species Complex in China

(2016) M. P. Guo et al.   PLANT DISEASE

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Soil fungal communities respond compositionally to recurring frequent prescribed burning in a managed southeastern US forest ecosystem

(2015) Alena K. Oliver et al.   FOREST ECOLOGY AND MANAGEMENT

True morels (Morchella, Pezizales) of Europe and North America: evolutionary relationships inferred from multilocus data and a unified taxonomy

(2015) Franck Richard et al.   MYCOLOGIA

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Bacteria associated with truffle-fruiting bodies contribute to truffle aroma

(2014) Richard Splivallo et al.   ENVIRONMENTAL MICROBIOLOGY

Morchella australiana sp. nov., an apparent Australian endemic from New South Wales and Victoria

(2014) Todd F. Elliott et al.   MYCOLOGIA

Do Differences in Chemical Composition of Stem and Cap of Amanita muscaria Fruiting Bodies Correlate with Topsoil Type?

(2014) Stanisław Deja et al.   PLoS One

Black truffle-associated bacterial communities during the development and maturation ofTuber melanosporumascocarps and putative functional roles

(2013) Sanjay Antony-Babu et al.   ENVIRONMENTAL MICROBIOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Bacterial farming by the fungus Morchella crassipes

(2013) M. Pion et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Diversity of cultivable bacteria associated with fruiting bodies of wild Himalayan Cantharellus spp.

(2012) Deepika Kumari et al.   ANNALS OF MICROBIOLOGY

Effect of 1-aminocyclopropane-1-carboxylic acid deaminase producing bacteria on the hyphal growth and primordium initiation of Agaricus bisporus

(2012) Shichang Chen et al.   Fungal Ecology

Granulicatella infection: diagnosis and management

(2012) J. S. Cargill et al.   JOURNAL OF MEDICAL MICROBIOLOGY

How well do ITS rDNA sequences differentiate species of true morels (Morchella)?

(2012) Xi-Hui Du et al.   MYCOLOGIA

Multilocus phylogenetic analysis of true morels (Morchella) reveals high levels of endemics in Turkey relative to other regions of Europe

(2012) Hatıra Taşkın et al.   MYCOLOGIA

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Evaluation of indigenous potent mushroom growth promoting bacteria (MGPB) on Agaricus bisporus production

(2011) F. Zarenejad et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Phylogeny and historical biogeography of true morels (Morchella) reveals an early Cretaceous origin and high continental endemism and provincialism in the Holarctic

(2010) Kerry O’Donnell et al.   FUNGAL GENETICS AND BIOLOGY

Kalapuya brunnea gen. & sp. nov. and its relationship to the other sequestrate genera in Morchellaceae

(2010) Matthew J. Trappe et al.   MYCOLOGIA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Effect of Casing Layer on Growth Promotion of the Edible MushroomPleurotus ostreatus

(2010) Young Sub Cho et al.   MYCOBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake

(2009) J.-H. Qu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir

(2008) J.-H. Qu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY