One panel to rule them all: DArTcap genotyping for population structure, historical demography, and kinship analyses, and its application to a threatened shark

A rare contemporary record of the Critically Endangered Ganges shark Glyphis gangeticus

(2018) R. W. Jabado et al.   JOURNAL OF FISH BIOLOGY

Accumulation of Mutational Load at the Edges of a Species Range

(2018) Yvonne Willi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reliably discriminating stock structure with genetic markers: Mixture models with robust and fast computation

(2018) Scott D. Foster et al.   Molecular Ecology Resources

Genetic relatedness reveals total population size of white sharks in eastern Australia and New Zealand

(2018) R. M. Hillary et al.   Scientific Reports

Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus)

(2018) Pierpaolo Maisano Delser et al.   HEREDITY

The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure

(2018) Willy Rodríguez et al.   HEREDITY

Population Genetics and Demography Unite Ecology and Evolution

(2017) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

Recreational fishing impacts on threatened river sharks: A potential conservation issue

(2017) Peter M. Kyne et al.   ECOLOGICAL MANAGEMENT & RESTORATION

Effective number of breeders from sibship reconstruction: empirical evaluations using hatchery steelhead

(2016) Michael W. Ackerman et al.   Evolutionary Applications

Inferring contemporary and historical genetic connectivity from juveniles

(2016) Pierre Feutry et al.   MOLECULAR ECOLOGY

RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data

(2016) Sandra L. Hoffberg et al.   Molecular Ecology Resources

Close-Kin Mark-Recapture

(2016) Mark V. Bravington et al.   STATISTICAL SCIENCE

Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture

(2016) Mark V. Bravington et al.   Nature Communications

Population genomics of C. melanopterus using target gene capture data: demographic inferences and conservation perspectives

(2016) Pierpaolo Maisano Delser et al.   Scientific Reports

Expansion Load and the Evolutionary Dynamics of a Species Range

(2015) Stephan Peischl et al.   AMERICAN NATURALIST

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Freshwater sharks and rays

(2015) Luis O. Lucifora et al.   CURRENT BIOLOGY

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

(2015) Dorte Bekkevold et al.   ICES JOURNAL OF MARINE SCIENCE

Targeted capture in evolutionary and ecological genomics

(2015) Matthew R. Jones et al.   MOLECULAR ECOLOGY

Exploring population size changes using SNP frequency spectra

(2015) Xiaoming Liu et al.   NATURE GENETICS

Rediscovery of the Threatened River Sharks, Glyphis garricki and G. glyphis, in Papua New Guinea

(2015) William T. White et al.   PLoS One

DNA capture reveals transoceanic gene flow in endangered river sharks

(2015) Chenhong Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence of discrete yellowfin tuna (Thunnus albacares) populations demands rethink of management for this globally important resource

(2015) P. M. Grewe et al.   Scientific Reports

Mitogenomics of the Speartooth Shark challenges ten years of control region sequencing

(2014) Pierre Feutry et al.   BMC EVOLUTIONARY BIOLOGY

Complex genetic structure of a euryhaline marine fish in temporarily open/closed estuaries from the wider Gulf of Aden

(2014) Edouard Lavergne et al.   MARINE BIOLOGY

Use of genotyping by sequencing data to develop a high-throughput and multifunctional SNP panel for conservation applications in Pacific lamprey

(2014) Jon E. Hess et al.   Molecular Ecology Resources

SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it

(2013) Joseph Lachance et al.   BIOESSAYS

DETECTING RANGE EXPANSIONS FROM GENETIC DATA

(2013) Benjamin M. Peter et al.   EVOLUTION

Two decades of genetic profiling yields first evidence of natal philopatry and long-term fidelity to parturition sites in sharks

(2013) Kevin A. Feldheim et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift

(2012) M. Slatkin et al.   GENETICS

Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics

(2012) Jennifer L. Anderson et al.   PLoS One

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Population genetic structure and genetic diversity of three critically endangered Pristis sawfishes in Australian waters

(2011) Nicole M. Phillips et al.   MARINE BIOLOGY

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

(2010) G. BERTORELLE et al.   MOLECULAR ECOLOGY

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations

(2009) T. Stadler et al.   GENETICS

Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood

(2009) Daniel Wegmann et al.   GENETICS

An integrated risk assessment for climate change: analysing the vulnerability of sharks and rays on Australia's Great Barrier Reef

(2009) ANDREW CHIN et al.   GLOBAL CHANGE BIOLOGY

Observations on the distribution, biology,  short-term movements and habitat requirements of river sharks Glyphis spp. in northern Australia

(2009) RD Pillans et al.   Endangered Species Research