4.5 Article

Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus)

Journal

HEREDITY
Volume 122, Issue 6, Pages 759-769

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/s41437-018-0164-0

Keywords

-

Funding

  1. Agence Nationale de la Recherche Demochips [ANR-12-BSV7-0012]
  2. NSF [DEB-01132229]

Ask authors/readers for more resources

The evolutionary history of species is a dynamic process as they modify, expand, and contract their spatial distributions over time. Range expansions (REs) occur through a series of founder events that are followed by migration among neighboring demes. The process usually results in structured metapopulations and leaves a distinct signature in the genetic variability of species. Explicitly modeling the consequences of complex demographic events such as REs is computationally very intensive. Here we propose an an alternative approach that requires less computational effort than a comprehensive RE model, but that can recover the demography of species undergoing a RE, by combining spatially explicit modelling with simplified but realistic metapopulation models. We examine the demographic and colonization history of Carcharhinus melanopterus, an abundant reef-associated shark, as a test case. We first used a population genomics approach to statistically confirm the occurrence of a RE in C. melanopterus, and identify its origin in the Indo-Australian Archipelago. Spatial genetic modelling identified two waves of stepping-stone colonization: an eastward wave moving through the Pacific and a westward one moving through the Indian Ocean. We show that metapopulation models best describe the demographic history of this species and that not accounting for this may lead to incorrectly interpreting the observed genetic variation as signals of widespread population bottlenecks. Our study highlights insights that can be gained about demography by coupling metapopulation models with spatial modeling and underscores the need for cautious interpretation of population genetic data when advancing conservation priorities.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Ecology

Out of Africa: demographic and colonization history of the Algerian mouse (Mus spretus Lataste)

Aude Lalis, Stefano Mona, Emmanuelle Stoetzel, Francois Bonhomme, Karim Souttou, Ali Ouarour, Stephane Aulagnier, Christiane Denys, Violaine Nicolas

HEREDITY (2019)

Article Ecology

Understanding the origin of the most isolated endemic reef fish fauna of the Indo-Pacific: Coral reef fishes of Rapa Nui

Erwan Delrieu-Trottin, Laura Brosseau-Acquaviva, Stefano Mona, Valentina Neglia, Emily C. Giles, Cristian Rapu-Edmunds, Pablo Saenz-Agudelo

JOURNAL OF BIOGEOGRAPHY (2019)

Letter Public, Environmental & Occupational Health

DNA from Tooth Embedded in Man's Foot Resolves Quarter-Century-Old Shark Bite Mystery

Lei Yang, John S. S. Denton, Shannon Corrigan, Tyler B. T. Bowling, Gavin J. P. Naylor

WILDERNESS & ENVIRONMENTAL MEDICINE (2019)

Article Biology

Urbanization without isolation: the absence of genetic structure among cities and forests in the tiny acorn ant Temnothorax nylanderi

A. Khimoun, C. Doums, M. Molet, B. Kaufmann, R. Peronnet, P. A. Eyer, S. Mona

BIOLOGY LETTERS (2020)

Article Zoology

The Smallest Known Free-Living White Shark Carcharodon carcharias (Lamniformes: Lamnidae): Ecological and Management Implications

Omar Santana-Morales, Alicia Abadia-Cardoso, Mauricio Hoyos-Padilla, Gavin J. P. Naylor, Shannon Corrigan, Luis Malpica-Cruz, Marc Aquino-Baleyto, Rodrigo Beas-Luna, Chugey A. Sepulveda, Jose L. Castillo-Geniz

COPEIA (2020)

Article Biochemistry & Molecular Biology

Coping with Pleistocene climatic fluctuations: Demographic responses in remote endemic reef fishes

Erwan Delrieu-Trottin, Nicolas Hubert, Emily C. Giles, Pascaline Chifflet-Belle, Arnaud Suwalski, Valentina Neglia, Cristian Rapu-Edmunds, Stefano Mona, Pablo Saenz-Agudelo

MOLECULAR ECOLOGY (2020)

Article Biochemistry & Molecular Biology

One panel to rule them all: DArTcap genotyping for population structure, historical demography, and kinship analyses, and its application to a threatened shark

Pierre Feutry, Floriaan Devloo-Delva, Adrien Tran Y. Lu, Stefano Mona, Rasanthi M. Gunasekera, Grant Johnson, Richard D. Pillans, Damian Jaccoud, Andrzej Kilian, David L. Morgan, Thor Saunders, Nicholas J. Bax, Peter M. Kyne

MOLECULAR ECOLOGY RESOURCES (2020)

Article Psychology, Biological

Climate shaped how Neolithic farmers and European hunter-gatherers interacted after a major slowdown from 6,100bceto 4,500bce

Lia Betti, Robert M. Beyer, Eppie R. Jones, Anders Eriksson, Francesca Tassi, Veronika Siska, Michela Leonardi, Pierpaolo Maisano Delser, Lily K. Bentley, Philip R. Nigst, Jay T. Stock, Ron Pinhasi, Andrea Manica

NATURE HUMAN BEHAVIOUR (2020)

Article Biochemistry & Molecular Biology

Bayesian Skyline Plots disagree with range size changes based on Species Distribution Models for Holarctic birds

Eleanor F. Miller, Rhys E. Green, Andrew Balmford, Pierpaolo Maisano Delser, Robert Beyer, Marius Somveille, Michela Leonardi, William Amos, Andrea Manica

Summary: This study examined 102 Holarctic bird species and found that most species experienced an increase in population size and geographical range since the Last Glacial Maximum, with wetland birds showing a later and greater increase in population size. However, there was no correlation between changes in population size and range size. This lack of correlation between Species Distribution Models (SDMs) and Bayesian Skyline Plots (BSPs) reconstructions suggests that changes in population densities may play a role independent of range shifts.

MOLECULAR ECOLOGY (2021)

Article Biochemistry & Molecular Biology

Coalescence times, life history traits and conservation concerns: An example from four coastal shark species from the Indo-Pacific

Pierre Lesturgie, Serge Planes, Stefano Mona

Summary: Dispersal abilities greatly influence population genetic structure, which in turn affects the coalescence pattern of lineages. Understanding the variation of effective population size (N-e) is crucial for devising conservation strategies in endangered species.

MOLECULAR ECOLOGY RESOURCES (2022)

Article Multidisciplinary Sciences

A curated dataset of modern and ancient high-coverage shotgun human genomes

Pierpaolo Maisano Delser, Eppie R. Jones, Anahit Hovhannisyan, Lara Cassidy, Ron Pinhasi, Andrea Manica

Summary: The study introduces a dataset containing genome data from 35 ancient human samples along with the genetic pipeline used for processing them. This resource allows researchers to analyze new samples and compare them to the reference dataset without re-processing published samples. The dataset can be easily expanded to increase sample distribution across time and space.

SCIENTIFIC DATA (2021)

Article Ecology

Integrative characterization of genetic and phenotypic differentiation in an ant species complex with strong hierarchical population structure and low dispersal abilities

P. A. Eyer, B. Finand, S. Mona, A. Khimoun, P. D'ettorre, P. Federici, C. Leroy, R. Cornette, P. Chifflet-Belle, T. Monnin, C. Doums

Summary: In this study, a multidisciplinary approach was used to investigate the genetic and phenotypic differentiation between two cryptic ant species with restricted dispersal. Results showed strong differentiation in genetic, morphological and chemical traits between species, and also within species among different localities. Behavioral experiments revealed reproductive isolation between species, and cuticular hydrocarbons, mtDNA sequences and number of hairs were shown to be reliable criteria for species discrimination.

HEREDITY (2023)

Article Fisheries

Walking, swimming or hitching a ride? Phylogenetics and biogeography of the walking shark genus Hemiscyllium

Christine L. Dudgeon, Shannon Corrigan, Lei Yang, Gerry R. Allen, Mark Erdmann, Fahmi, Hagi Y. Sugeha, William T. White, Gavin J. P. Naylor

MARINE AND FRESHWATER RESEARCH (2020)

No Data Available