A GT‐seq panel for walleye ( Sander vitreus ) provides important insights for efficient development and implementation of amplicon panels in non‐model organisms

Genotyping‐by‐sequencing illuminates high levels of divergence among sympatric forms of coregonines in the Laurentian Great Lakes

(2020) Amanda S. Ackiss et al.   Evolutionary Applications

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Dispersal of a nearshore marine fish connects marine reserves and adjacent fished areas along an open coast

(2019) Diana S. Baetscher et al.   MOLECULAR ECOLOGY

Parallel introgression and selection on introduced alleles in a native species

(2019) Rachael A. Bay et al.   MOLECULAR ECOLOGY

Walleye S ander vitreus Genetic Characterization in the Northern Ceded Territory of Wisconsin: Implications for Stocking using Conservation Strategies

(2019) J. J. Hammen et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Empowering conservation practice with efficient and economical genotyping from poor quality samples

(2019) Meghana Natesh et al.   Methods in Ecology and Evolution

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology

(2019) Danielle A. Schmidt et al.   Molecular Ecology Resources

Restoration‐mediated secondary contact leads to introgression of alewife ecotypes separated by a colonial‐era dam

(2019) Kerry Reid et al.   Evolutionary Applications

Attack of the PCR clones: Rates of clonality have little effect on RAD‐seq genotype calls

(2019) Peter T. Euclide et al.   Molecular Ecology Resources

Production dynamics reveal hidden overharvest of inland recreational fisheries

(2019) Holly S. Embke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Method for improving the quality of genomic DNA obtained from minute quantities of tissue and blood samples using Chelex 100 resin

(2018) Utkarsha A. Singh et al.   BIOLOGICAL PROCEDURES ONLINE

Bayesian inference from the conditional genetic stock identification model

(2018) Benjamin M. Moran et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Eroding productivity of walleye populations in northern Wisconsin lakes

(2018) Andrew L. Rypel et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Resolving allele dosage in duplicated loci using genotyping-by-sequencing data: A path forward for population genetic analysis

(2018) Garrett J. McKinney et al.   Molecular Ecology Resources

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing

(2018) Yoshihiko Onda et al.   Frontiers in Plant Science

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

(2017) Diana S. Baetscher et al.   Molecular Ecology Resources

A novel three-round multiplex PCR for SNP genotyping with next generation sequencing

(2016) Ke Chen et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

(2016) Garrett J. McKinney et al.   Molecular Ecology Resources

Contribution and Performance of Stocked Walleyes in the Recovery of the Red Lakes, Minnesota, Fishery

(2016) Dale E. Logsdon et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Single-nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing improve genetic stock identification of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska

(2014) Wesley A. Larson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Rank and Order: Evaluating the Performance of SNPs for Individual Assignment in a Non-Model Organism

(2012) Caroline G. Storer et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod,Gadus morhua

(2011) IAN R. BRADBURY et al.   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Single-Nucleotide Polymorphisms (SNPs) under Diversifying Selection Provide Increased Accuracy and Precision in Mixed-Stock Analyses of Sockeye Salmon from the Copper River, Alaska

(2011) Michael W. Ackerman et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Signatures of vicariance, postglacial dispersal and spawning philopatry: population genetics of the walleyeSander vitreus

(2009) C. A. STEPIEN et al.   MOLECULAR ECOLOGY