More affordable and effective noninvasive single nucleotide polymorphism genotyping using high‐throughput amplicon sequencing

Fast sequence-based microsatellite genotyping development workflow

(2020) Olivier Lepais et al.   PeerJ

Improving cost-efficiency of faecal genotyping: New tools for elephant species

(2019) Stéphanie Bourgeois et al.   PLoS One

The future is now: amplicon sequencing and sequence capture usher in the conservation genomics era

(2019) Mariah H. Meek et al.   Molecular Ecology Resources

Random PCR‐based genotyping by sequencing technology GRAS‐Di (genotyping by random amplicon sequencing, direct) reveals genetic structure of mangrove fishes

(2019) Sho Hosoya et al.   Molecular Ecology Resources

Empowering conservation practice with efficient and economical genotyping from poor quality samples

(2019) Meghana Natesh et al.   Methods in Ecology and Evolution

Biotic factors influencing the unexpected distribution of a Humboldt marten (Martes caurina humboldtensis) population in a young coastal forest

(2019) Charlotte E. Eriksson et al.   PLoS One

A highly flexible and repeatable genotyping method for aquaculture studies based on target amplicon sequencing using next-generation sequencing technology

(2019) Mana Sato et al.   Scientific Reports

Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology

(2019) Danielle A. Schmidt et al.   Molecular Ecology Resources

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

(2018) Maura Costello et al.   BMC GENOMICS

Genome sequencing and conservation genomics in the Scandinavian wolverine population

(2018) Robert Ekblom et al.   CONSERVATION BIOLOGY

Genetic and genomic monitoring with minimally invasive sampling methods

(2018) Emma L. Carroll et al.   Evolutionary Applications

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing

(2018) Yoshihiko Onda et al.   Frontiers in Plant Science

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

(2017) Diana S. Baetscher et al.   Molecular Ecology Resources

Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays

(2017) Alina von Thaden et al.   Scientific Reports

Using non-invasively collected genetic data to estimate density and population size of tigers in the Bangladesh Sundarbans

(2017) M. Abdul Aziz et al.   Global Ecology and Conservation

Comparison of SNP and microsatellite genotyping panels for spatial assignment of individuals to natal range: A case study using the American black bear ( Ursus americanus )

(2016) Emily E. Puckett et al.   BIOLOGICAL CONSERVATION

From population genomics to conservation and management: a workflow for targeted analysis of markers identified using genome-wide approaches in Atlantic salmonSalmo salar

(2016) T. Aykanat et al.   JOURNAL OF FISH BIOLOGY

High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA

(2016) M. De Barba et al.   Molecular Ecology Resources

Environmental DNA from Residual Saliva for Efficient Noninvasive Genetic Monitoring of Brown Bears (Ursus arctos)

(2016) Rachel E. Wheat et al.   PLoS One

Phylogeographic Analyses of American Black Bears (Ursus americanus) Suggest Four Glacial Refugia and Complex Patterns of Postglacial Admixture

(2015) Emily E. Puckett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single nucleotide polymorphism-based dispersal estimates using noninvasive sampling

(2015) Anita J. Norman et al.   Ecology and Evolution

How and why should we implement genomics into conservation?

(2014) Barry J. McMahon et al.   Evolutionary Applications

A single-nucleotide polymorphism-based approach for rapid and cost-effective genetic wolf monitoring in Europe based on noninvasively collected samples

(2014) Robert H. S. Kraus et al.   Molecular Ecology Resources

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Noninvasive individual and species identification of jaguars (Panthera onca), pumas (Puma concolor) and ocelots (Leopardus pardalis) in Belize, Central America using cross-species microsatellites and faecal DNA

(2014) Claudia Wultsch et al.   Molecular Ecology Resources

Assessment of coyote-wolf-dog admixture using ancestry-informative diagnostic SNPs

(2013) J. Monzón et al.   MOLECULAR ECOLOGY

Comparison of single nucleotide polymorphisms and microsatellites in non-invasive genetic monitoring of a wolf population

(2012) Elena Fabbri et al.   Archives of Biological Sciences

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Allelematch: an R package for identifying unique multilocus genotypes where genotyping error and missing data may be present

(2012) PAUL GALPERN et al.   Molecular Ecology Resources

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Guidelines of the American Society of Mammalogists for the use of wild mammals in research

(2011) Robert S. Sikes et al.   JOURNAL OF MAMMALOGY

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

Use of Spatial Capture-Recapture Modeling and DNA Data to Estimate Densities of Elusive Animals

(2010) MARC KÉRY et al.   CONSERVATION BIOLOGY

Hierarchical models for estimating density from DNA mark–recapture studies

(2009) Beth Gardner et al.   ECOLOGY