Vertical distribution of microbial communities and their response to metal(loid)s along the vadose zone–aquifer sediments

Microbial Diversity in Deep-Subsurface Hot Brines of Northwest Poland: from Community Structure to Isolate Characteristics

(2020) Agnieszka Kalwasińska et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Structures in Terrestrial Subsurface Sediments from the Southern Kanto Plain, Japan

(2020) Satoshi Ohkubo et al.   GEOMICROBIOLOGY JOURNAL

Distribution, pollution status, and source apportionment of trace metals in lake sediments under the influence of the South-to-North Water Transfer Project, China

(2019) Wen Zhuang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Fungi and bacteria respond differently to changing environmental conditions within a soil profile

(2019) Sebastian Preusser et al.   SOIL BIOLOGY & BIOCHEMISTRY

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions

(2019) Martina Herrmann et al.   Frontiers in Microbiology

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons

(2019) Tess E. Brewer et al.   mBio

Saline stress modifies the effect of cadmium toxicity on soil archaeal communities

(2019) Meng Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Variation in rhizosphere microbiota correlates with edaphic factor in an abandoned antimony tailing dump

(2019) Enzong Xiao et al.   ENVIRONMENTAL POLLUTION

Sandy soils amended with bentonite induced changes in soil microbiota and fungistasis in maize fields

(2019) Huaying Zhang et al.   APPLIED SOIL ECOLOGY

Dispersal limitation relative to environmental filtering governs the vertical small‐scale assembly of soil microbiomes during restoration

(2019) Weimin Chen et al.   JOURNAL OF APPLIED ECOLOGY

Soil physicochemical and microbial characteristics of contrasting land-use types along soil depth gradients

(2018) Dong Liu et al.   CATENA

Microbial pathways for nitrogen loss in an upland soil

(2018) Guibing Zhu et al.   ENVIRONMENTAL MICROBIOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Aquifer recharge with stormwater runoff in urban areas: Influence of vadose zone thickness on nutrient and bacterial transfers from the surface of infiltration basins to groundwater

(2018) Jérémy Voisin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Vertical variation of a black soil's properties in response to freeze-thaw cycles and its links to shift of microbial community structure

(2018) Ziming Han et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterizing heavy metals in combined sewer overflows and its influence on microbial diversity

(2018) Zuxin Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Vertical changes of soil microbial properties in claypan soils

(2018) Che-Jen Hsiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores

(2018) Binu Mani Tripathi et al.   Scientific Reports

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

(2018) Alexander J. Probst et al.   Nature Microbiology

Microbial community structure in deep natural gas-bearing aquifers subjected to sulfate-containing fluid injection

(2018) Taiki Katayama et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Deep Unsaturated Zone Contributions to Carbon Cycling in Semiarid Environments

(2018) Jiamin Wan et al.   Journal of Geophysical Research-Biogeosciences

The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1)

(2017) Rosa León-Zayas et al.   ENVIRONMENTAL MICROBIOLOGY

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Evidence for early life in Earth’s oldest hydrothermal vent precipitates

(2017) Matthew S. Dodd et al.   NATURE

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

(2017) Eric D. Becraft et al.   Frontiers in Microbiology

Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya

(2016) Anne Kelly Kambura et al.   BMC MICROBIOLOGY

Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau

(2016) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer

(2016) Talia N M Jewell et al.   ISME Journal

Biofilms: an emergent form of bacterial life

(2016) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Microbial communities in riparian soils of a settling pond for mine drainage treatment

(2016) Miaochun Fan et al.   WATER RESEARCH

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria

(2016) Joseph A. Russell et al.   Frontiers in Microbiology

High Frequency of Thermodesulfovibrio spp. and Anaerolineaceae in Association with Methanoculleus spp. in a Long-Term Incubation of n-Alkanes-Degrading Methanogenic Enrichment Culture

(2016) Bo Liang et al.   Frontiers in Microbiology

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Metagenomic insights into Cr(VI) effect on microbial communities and functional genes of an expanded granular sludge bed reactor treating high-nitrate wastewater

(2015) Yu Miao et al.   WATER RESEARCH

Diverse uncultivated ultra-small bacterial cells in groundwater

(2015) Birgit Luef et al.   Nature Communications

Deterministic processes vary during community assembly for ecologically dissimilar taxa

(2015) Jeff R. Powell et al.   Nature Communications

Groundwater Isolation Governs Chemistry and Microbial Community Structure along Hydrologic Flowpaths

(2015) Sarah Ben Maamar et al.   Frontiers in Microbiology

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape

(2015) Florentin Constancias et al.   MicrobiologyOpen

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

(2014) Yu Shi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An overview of permeable reactive barriers for in situ sustainable groundwater remediation

(2014) Franklin Obiri-Nyarko et al.   CHEMOSPHERE

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Towards sustainable management of groundwater: Policy developments in The Netherlands

(2014) Johannes P.A. Lijzen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Assessment of heavy metal pollution in sediments from Xiangjiang River (China) using sequential extraction and lead isotope analysis

(2014) Bo-feng Jiang et al.   Journal of Central South University

Biodegradation of Chlorobenzene, 1,2-Dichlorobenzene, and 1,4-Dichlorobenzene in the Vadose Zone

(2013) Zohre Kurt et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

pH dominates variation in tropical soil archaeal diversity and community structure

(2013) Binu M. Tripathi et al.   FEMS MICROBIOLOGY ECOLOGY

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Denaturing Gradient Gel Electrophoresis and Barcoded Pyrosequencing Reveal Unprecedented Archaeal Diversity in Mangrove Sediment and Rhizosphere Samples

(2012) Ana C. C. Pires et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Taxa-area relationship and neutral dynamics influence the diversity of fungal communities on senesced tree leaves

(2012) Larry M. Feinstein et al.   ENVIRONMENTAL MICROBIOLOGY

Subseafloor nitrogen transformations in diffuse hydrothermal vent fluids of the Juan de Fuca Ridge evidenced by the isotopic composition of nitrate and ammonium

(2012) Annie Bourbonnais et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Substrate utilization of stress tolerant methylotrophs isolated from revegetated heavy metal polluted coalmine spoil

(2012) D. D. Giri et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities

(2012) William J. Brazelton et al.   Frontiers in Microbiology

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site

(2011) Xueju Lin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Discrimination of lithogenic and anthropogenic sources of metals and sulphur in soils of the central-northern part of the Zambian Copperbelt Mining District: A topsoil vs. subsurface soil concept

(2010) Bohdan Kříbek et al.   JOURNAL OF GEOCHEMICAL EXPLORATION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of the Iron-Reducing Bacteria on the Release of Heavy Metals in Anaerobic River Sediment

(2010) Catherine Gounou et al.   WATER AIR AND SOIL POLLUTION

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Microbial biodiversity in groundwater ecosystems

(2008) C. GRIEBLER et al.   FRESHWATER BIOLOGY

Spatial autocorrelation and dispersal limitation in freshwater organisms

(2008) Jonathan B. Shurin et al.   OECOLOGIA