A methodological framework to analyse determinants of host–microbiota networks, with an application to the relationships between Daphnia magna' s gut microbiota and bacterioplankton

Does phenology explain plant–pollinator interactions at different latitudes? An assessment of its explanatory power in plant–hoverfly networks in French calcareous grasslands

(2020) Natasha de Manincor et al.   OIKOS

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities

(2020) Emilie Macke et al.   Frontiers in Microbiology

Disentangling good from bad practices in the selection of spatial or phylogenetic eigenvectors

(2018) David Bauman et al.   ECOGRAPHY

Effect of pollination strategy, phylogeny and distribution on pollination niches of Euro-Mediterranean orchids

(2018) Nina Joffard et al.   JOURNAL OF ECOLOGY

Motifs in bipartite ecological networks: uncovering indirect interactions

(2018) Benno I. Simmons et al.   OIKOS

Bringing Elton and Grinnell together: a quantitative framework to represent the biogeography of ecological interaction networks

(2018) Dominique Gravel et al.   ECOGRAPHY

Multiple interactions networks: towards more realistic descriptions of the web of life

(2017) David García-Callejas et al.   OIKOS

Next-Generation Global Biomonitoring: Large-scale, Automated Reconstruction of Ecological Networks

(2017) David A. Bohan et al.   TRENDS IN ECOLOGY & EVOLUTION

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks

(2017) Julia Astegiano et al.   Scientific Reports

A common framework for identifying linkage rules across different types of interactions

(2016) Ignasi Bartomeus et al.   FUNCTIONAL ECOLOGY

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Matching–centralitydecomposition and the forecasting of new links in networks

(2016) Rudolf P. Rohr et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Networking Our Way to Better Ecosystem Service Provision

(2016)   TRENDS IN ECOLOGY & EVOLUTION

mangal - making ecological network analysis simple

(2015) Timothée Poisot et al.   ECOGRAPHY

Resurrecting complexity: the interplay of plasticity and rapid evolution in the multiple trait response to strong changes in predation pressure in the water fleaDaphnia magna

(2015) Robby Stoks et al.   ECOLOGY LETTERS

Seed-dispersal networks on the Canaries and the Galápagos archipelagos: interaction modules as biogeographical entities

(2015) M. Nogales et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

(2015) Martijn Callens et al.   ISME Journal

Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material

(2015) Austen C. Thomas et al.   Molecular Ecology Resources

Plant-mycorrhizal fungus co-occurrence network lacks substantial structure

(2015) Francisco Encinas-Viso et al.   OIKOS

Exploring the evolutionary signature of food webs' backbones using functional traits

(2015) Giulio V. Dalla Riva et al.   OIKOS

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Quantifying randomness in real networks

(2015) Chiara Orsini et al.   Nature Communications

Using latent variable models to identify large networks of species-to-species associations at different spatial scales

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Clustering methods differ in their ability to detect patterns in ecological networks

(2015) Jean-Benoist Leger et al.   Methods in Ecology and Evolution

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Consensus RDA across dissimilarity coefficients for canonical ordination of community composition data

(2013) F. Guillaume Blanchet et al.   ECOLOGICAL MONOGRAPHS

Understanding Linkage Rules in Plant-Pollinator Networks by Using Hierarchical Models That Incorporate Pollinator Detectability and Plant Traits

(2013) Ignasi Bartomeus   PLoS One

Inferring food web structure from predator-prey body size relationships

(2013) Dominique Gravel et al.   Methods in Ecology and Evolution

Evolutionary Conservation of Species' Roles in Food Webs

(2012) D. B. Stouffer et al.   SCIENCE

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents

(2011) W. D. Kissling et al.   JOURNAL OF BIOGEOGRAPHY

Modeling Food Webs: Exploring Unexplained Structure Using Latent Traits

(2010) Rudolf Philippe Rohr et al.   AMERICAN NATURALIST

Nestedness versus modularity in ecological networks: two sides of the same coin?

(2010) Miguel A. Fortuna et al.   JOURNAL OF ANIMAL ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

The assembly and disassembly of ecological networks

(2009) J. Bascompte et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Architecture of an Antagonistic Tree/Fungus Network: The Asymmetric Influence of Past Evolutionary History

(2008) Corinne Vacher et al.   PLoS One

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Block clustering with Bernoulli mixture models: Comparison of different approaches

(2007) Gérard Govaert et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS