Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system

Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship

(2020) Jiwen Liu et al.   ISME Journal

Using null models to compare bacterial and microeukaryotic metacommunity assembly under shifting environmental conditions

(2020) Máté Vass et al.   Scientific Reports

Multiscale environmental heterogeneity in a large river-floodplain system

(2020) Gisela Mayora et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Dispersal homogenizes communities via immigration even at low rates in a simplified synthetic bacterial metacommunity

(2019) Stilianos Fodelianakis et al.   Nature Communications

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Community Assembly Mechanisms Underlying the Core and Random Bacterioplankton and Microeukaryotes in a River–Reservoir System

(2019) Alain Isabwe et al.   Water

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

(2018) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

In situ immune response and mechanisms of cell damage in central nervous system of fatal cases microcephaly by Zika virus

(2018) Raimunda S. S. Azevedo et al.   Scientific Reports

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Terrestrial origin of bacterial communities in complex boreal freshwater networks

(2015) Clara Ruiz-González et al.   ECOLOGY LETTERS

Unravelling the role of determinism and stochasticity in structuring the phytoplanktonic metacommunity of the Paraná River floodplain

(2015) Melina Devercelli et al.   HYDROBIOLOGIA

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Deterministic processes vary during community assembly for ecologically dissimilar taxa

(2015) Jeff R. Powell et al.   Nature Communications

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects

(2014) Jani Heino et al.   FRESHWATER BIOLOGY

Zooplankton and their driving factors in a large subtropical river during low water periods

(2014) Susana Beatriz José de Paggi et al.   Fundamental and Applied Limnology

Assessing the relative importance of neutral stochasticity in ecological communities

(2014) Mark Vellend et al.   OIKOS

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is dispersal neutral?

(2014) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Spatial variability of chlorophyll-a and abiotic variables in a river–floodplain system during different hydrological phases

(2013) Gisela Mayora et al.   HYDROBIOLOGIA

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Ecological Responses to Different Degrees of Hydrologic Connectivity: Assessing Patterns in the Bionomy of Benthic Chironomids in a Large River-Floodplain System

(2013) Florencia L. Zilli et al.   WETLANDS

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Importance of space and the local environment for linking local and regional abundances of microbes

(2012) Ö Östman et al.   AQUATIC MICROBIAL ECOLOGY

Biodiversity in water and on land

(2012) Richard K. Grosberg et al.   CURRENT BIOLOGY

Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses

(2012) Steven A J Declerck et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Flood pulse and the dynamics of fish assemblage structure from neotropical floodplain lakes

(2011) Pablo A. Scarabotti et al.   ECOLOGY OF FRESHWATER FISH

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Joint consequences of dispersal and niche overlap on local diversity and resource use

(2011) Benjamin Gilbert   JOURNAL OF ECOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Correlation Network Analysis Applied to Complex Biofilm Communities

(2011) Ana E. Duran-Pinedo et al.   PLoS One

The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten

(2011) James Rosindell et al.   TRENDS IN ECOLOGY & EVOLUTION

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Towards a unification of unified theories of biodiversity

(2010) Brian J. McGill   ECOLOGY LETTERS

Hidden patterns of phylogenetic non-stationarity overwhelm comparative analyses of niche conservatism and divergence

(2010) José Alexandre Felizola Diniz-Filho et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities

(2009) A Barberán et al.   AQUATIC MICROBIAL ECOLOGY

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

(2009) Steven W. Kembel   ECOLOGY LETTERS

Changes in phytoplankton morpho-functional groups induced by extreme hydroclimatic events in the Middle Paraná River (Argentina)

(2009) Melina Devercelli   HYDROBIOLOGIA

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

Hydrological Connectivity as a Shaping Force in the Zooplankton Community of Two Lakes in the Paraná River Floodplain

(2008) Susana Beatriz José de Paggi et al.   INTERNATIONAL REVIEW OF HYDROBIOLOGY

The effects of river floodwaters on floodplain wetland water quality and diatom assemblages

(2008) Christine L. Weilhoefer et al.   WETLANDS