A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea

Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes

(2014) Pere Puigbò et al.   BMC BIOLOGY

Update on RefSeq microbial genomes resources

(2014) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

How many signal peptides are there in bacteria?

(2013) Dmitry N. Ivankov et al.   ENVIRONMENTAL MICROBIOLOGY

The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection

(2013) B. Hu et al.   SCIENCE

A new proposed taxon for double-stranded DNA viruses, the order “Ligamenvirales”

(2012) David Prangishvili et al.   ARCHIVES OF VIROLOGY

Structural genomics plucks high-hanging membrane proteins

(2012) Edda Kloppmann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

(2012) Bonnie L. Hurwitz et al.   ENVIRONMENTAL MICROBIOLOGY

Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes

(2012) D. M. Kristensen et al.   JOURNAL OF BACTERIOLOGY

Going viral: next-generation sequencing applied to phage populations in the human gut

(2012) Alejandro Reyes et al.   NATURE REVIEWS MICROBIOLOGY

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

(2012) Dániel Kozma et al.   NUCLEIC ACIDS RESEARCH

A guideline to proteome-wide α-helical membrane protein topology predictions

(2012) Konstantinos D. Tsirigos et al.   PROTEOMICS

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

Computational methods for Gene Orthology inference

(2011) D. M. Kristensen et al.   BRIEFINGS IN BIOINFORMATICS

Evolutionarily Conserved Orthologous Families in Phages Are Relatively Rare in Their Prokaryotic Hosts

(2011) D. M. Kristensen et al.   JOURNAL OF BACTERIOLOGY

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes

(2011) J. Grilli et al.   NUCLEIC ACIDS RESEARCH

Camps 2.0: Exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins

(2011) Sindy Neumann et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Influenza M2 proton channels

(2010) Rafal M. Pielak et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

ViralZone: a knowledge resource to understand virus diversity

(2010) Chantal Hulo et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

(2010) Erik Wallin et al.   PROTEIN SCIENCE

Integrity of the Early Secretory Pathway Promotes, but Is Not Required for, Severe Acute Respiratory Syndrome Coronavirus RNA Synthesis and Virus-Induced Remodeling of Endoplasmic Reticulum Membranes

(2009) K. Knoops et al.   JOURNAL OF VIROLOGY

Scaling laws in functional genome content across prokaryotic clades and lifestyles

(2009) Nacho Molina et al.   TRENDS IN GENETICS

New dimensions of the virus world discovered through metagenomics

(2009) David M. Kristensen et al.   TRENDS IN MICROBIOLOGY

Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene psbA in Marine and Freshwaters

(2008) C. Chenard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The unique architecture of Bunyamwera virus factories around the Golgi complex

(2008) Juan Fontana et al.   CELLULAR MICROBIOLOGY

Redefining viruses: lessons from Mimivirus

(2008) Didier Raoult et al.   NATURE REVIEWS MICROBIOLOGY

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

(2008) E. V. Koonin et al.   NUCLEIC ACIDS RESEARCH

Transmembrane helix predictions revisited

(2002) Chien Peter Chen et al.   PROTEIN SCIENCE