How many signal peptides are there in bacteria?

EcoGene 3.0

(2012) Jindan Zhou et al.   NUCLEIC ACIDS RESEARCH

Improved signal peptide predictions in mycobacteria?

(2012) Nils Anders Leversen et al.   TUBERCULOSIS

Unexpected Diversity of Signal Peptides in Prokaryotes

(2012) S. H. Payne et al.   mBio

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

(2011) An Staes et al.   Nature Protocols

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

(2011) Eli Venter et al.   PLoS One

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

(2010) Machtelt Braaksma et al.   BMC GENOMICS

Computational Prediction and Experimental Validation of Signal Peptide Cleavages in the Extracellular Proteome of a Natural Microbial Community

(2010) Brian K. Erickson et al.   JOURNAL OF PROTEOME RESEARCH

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

(2010) Nathan E Lewis et al.   Molecular Systems Biology

Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli

(2010) S. Tanaka et al.   SCIENCE

A Ranking-Based Scoring Function for Peptide−Spectrum Matches

(2009) Ari M. Frank   JOURNAL OF PROTEOME RESEARCH

High-performance signal peptide prediction based on sequence alignment techniques

(2008) K. Frank et al.   BIOINFORMATICS

Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases

(2008) Sangtae Kim et al.   JOURNAL OF PROTEOME RESEARCH

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

(2008) Sheila M. Reynolds et al.   PLoS Computational Biology