Evolutionarily Conserved Orthologous Families in Phages Are Relatively Rare in Their Prokaryotic Hosts

Mycobacteriophages: Genes and Genomes

(2010) Graham F. Hatfull   Annual Review of Microbiology

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size

(2010) Graham F. Hatfull et al.   JOURNAL OF MOLECULAR BIOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum

(2009) Eugene V Koonin et al.   Biology Direct

Viral lysis of Phaeocystis pouchetii: Implications for algal population dynamics and heterotrophic C, N and P cycling

(2009) Jakob Haaber et al.   ISME Journal

The Genome of Bacillus subtilis Bacteriophage SPO1

(2009) Charles R. Stewart et al.   JOURNAL OF MOLECULAR BIOLOGY

Virology in the 21st Century

(2009) L. W. Enquist et al.   JOURNAL OF VIROLOGY

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil

(2009) M. Vos et al.   SCIENCE

New dimensions of the virus world discovered through metagenomics

(2009) David M. Kristensen et al.   TRENDS IN MICROBIOLOGY

The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants

(2009) Md Asadulghani et al.   PLoS Pathogens

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

(2009) Diego Cortez et al.   GENOME BIOLOGY

Prophinder: a computational tool for prophage prediction in prokaryotic genomes

(2008) Gipsi Lima-Mendez et al.   BIOINFORMATICS

Genome classification by gene distribution: An overlapping subspace clustering approach

(2008) Jason Li et al.   BMC EVOLUTIONARY BIOLOGY

Identification and investigation of ORFans in the viral world

(2008) Yanbin Yin et al.   BMC GENOMICS

Bacteriophage genomics

(2008) Graham F Hatfull   CURRENT OPINION IN MICROBIOLOGY

Global-scale processes with a nanoscale drive: the role of marine viruses

(2008) Corina P D Brussaard et al.   ISME Journal

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

Biodiversity and biogeography of phages in modern stromatolites and thrombolites

(2008) Christelle Desnues et al.   NATURE

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Exploring the prokaryotic virosphere

(2008) André M. Comeau et al.   RESEARCH IN MICROBIOLOGY