Sequence specificity between interacting and non-interacting homologs identifies interface residues – a homodimer and monomer use case
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Title
Sequence specificity between interacting and non-interacting homologs identifies interface residues – a homodimer and monomer use case
Authors
Keywords
Protein-protein Interaction, Sequence specificity, Non-interacting homologs, Sequence-based interface prediction, Sequence harmony
Journal
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-10-08
DOI
10.1186/s12859-015-0758-y
References
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Note: Only part of the references are listed.- PconsFold: improved contact predictions improve protein models
- (2014) Mirco Michel et al. BIOINFORMATICS
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- (2013) David de Juan et al. NATURE REVIEWS GENETICS
- Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
- (2013) H. Kamisetty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein structure prediction from sequence variation
- (2012) Debora S Marks et al. NATURE BIOTECHNOLOGY
- What Evidence Is There for the Homology of Protein-Protein Interactions?
- (2012) Anna C. F. Lewis et al. PLoS Computational Biology
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
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- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
- (2010) Panagiotis L. Kastritis et al. JOURNAL OF PROTEOME RESEARCH
- A survey of available tools and web servers for analysis of protein-protein interactions and interfaces
- (2009) N. Tuncbag et al. BRIEFINGS IN BIOINFORMATICS
- Progress and challenges in predicting protein-protein interaction sites
- (2009) I. Ezkurdia et al. BRIEFINGS IN BIOINFORMATICS
- Present and future challenges and limitations in protein-protein docking
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