The landscape of accessible chromatin in bovine oocytes and early embryos

An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos

(2019) Longqi Liu et al.   Nature Communications

Maintenance of CTCF- and Transcription Factor-Mediated Interactions from the Gametes to the Early Mouse Embryo

(2019) Yoon Hee Jung et al.   MOLECULAR CELL

Methylome Dynamics of Bovine Gametes and in vivo Early Embryos

(2019) Jingyue Ellie Duan et al.   Frontiers in Genetics

The mitochondrial TMEM177 associates with COX20 during COX2 biogenesis

(2018) Isotta Lorenzi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

DNA methylomes of bovine gametes and in vivo produced preimplantation embryos

(2018) Zongliang Jiang et al.   BIOLOGY OF REPRODUCTION

Use of animal models for the imaging and quantification of angiogenesis

(2018) Min Liu et al.   EXPERIMENTAL ANIMALS

TFAP2C regulates transcription in human naive pluripotency by opening enhancers

(2018) William A. Pastor et al.   NATURE CELL BIOLOGY

Embryonic neurogenesis in echinoderms

(2018) Veronica F. Hinman et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Chromatin analysis in human early development reveals epigenetic transition during ZGA

(2018) Jingyi Wu et al.   NATURE

NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors

(2018) John M. Gaspar   BMC BIOINFORMATICS

The chromatin accessibility landscape of primary human cancers

(2018) M. Ryan Corces et al.   SCIENCE

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

(2018) Guangshuai Jia et al.   Nature Communications

Bovine embryo induces an anti-inflammatory response in uterine epithelial cells and immune cells in vitro: possible involvement of interferon tau as an intermediator

(2017) Anup K. TALUKDER et al.   JOURNAL OF REPRODUCTION AND DEVELOPMENT

Maternal H3K27me3 controls DNA methylation-independent imprinting

(2017) Azusa Inoue et al.   NATURE

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo

(2017) Joanna W Jachowicz et al.   NATURE GENETICS

The Mitochondrial Rhomboid Protease PARL Is Regulated by PDK2 to Integrate Mitochondrial Quality Control and Metabolism

(2017) Guang Shi et al.   Cell Reports

Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes

(2017) Yoon Hee Jung et al.   Cell Reports

LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation

(2016) Jennifer C. Chow et al.   CELL

Establishing Chromatin Regulatory Landscape during Mouse Preimplantation Development

(2016) Falong Lu et al.   CELL

The landscape of accessible chromatin in mammalian preimplantation embryos

(2016) Jingyi Wu et al.   NATURE

Pregnancy losses in cattle: potential for improvement

(2016) M. G. Diskin et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

Retrotransposons as regulators of gene expression

(2016) R. A. Elbarbary et al.   SCIENCE

Transcription factor AP-2  induces early Cdx2 expression and represses HIPPO signaling to specify the trophectoderm lineage

(2015) Z. Cao et al.   DEVELOPMENT

Kruppel-like factor family genes are expressed duringXenopusembryogenesis and involved in germ layer formation and body axis patterning

(2015) Yan Gao et al.   DEVELOPMENTAL DYNAMICS

How the embryo makes a limb: determination, polarity and identity

(2015) Cheryll Tickle   JOURNAL OF ANATOMY

Retrotransposons shape species-specific embryonic stem cell gene expression

(2015) Luisa Robbez-Masson et al.   Retrovirology

Epigenetic regulation of transcription and possible functions of mammalian short interspersed elements, SINEs

(2015) Kenji Ichiyanagi   GENES & GENETIC SYSTEMS

Cell Proliferation Patterns in Early Zebrafish Development

(2014) Mario A. Mendieta-Serrano et al.   Anatomical Record-Advances in Integrative Anatomy and Evolutionary Biology

Changes in large-scale chromatin structure and function during oogenesis: A journey in company with follicular cells

(2014) Alberto M. Luciano et al.   ANIMAL REPRODUCTION SCIENCE

Transcriptional landscape of repetitive elements in normal and cancer human cells

(2014) Steven W Criscione et al.   BMC GENOMICS

Transcriptional profiles of bovine in vivo pre-implantation development

(2014) Zongliang Jiang et al.   BMC GENOMICS

Mitochondrial protein translocases for survival and wellbeing

(2014) Anna Magdalena Sokol et al.   FEBS LETTERS

Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C

(2014) Nicola H. Dryden et al.   GENOME RESEARCH

Chromatin dynamics in the regulation of cell fate allocation during early embryogenesis

(2014) Adam Burton et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Fine mapping of genome activation in bovine embryos by RNA sequencing

(2014) A. Graf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The missing story behind Genome Wide Association Studies: single nucleotide polymorphisms in gene deserts have a story to tell

(2014) William Schierding et al.   Frontiers in Genetics

STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown

(2013) R. A. Elbarbary et al.   GENES & DEVELOPMENT

A New Direction for Gene Looping

(2012) Carlo E. Randise-Hinchliff et al.   DEVELOPMENTAL CELL

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

(2012) R. Fenouil et al.   GENOME RESEARCH

SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters

(2012) M. R. H. Estecio et al.   MOLECULAR CANCER RESEARCH

Breast cancer risk–associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression

(2012) Richard Cowper-Sal·lari et al.   NATURE GENETICS

The role of transcription factor Tcfap2c/TFAP2C in trophectoderm development

(2012) Peter Kuckenberg et al.   REPRODUCTIVE BIOMEDICINE ONLINE

Trophectoderm Lineage Determination in Cattle

(2011) Debra K. Berg et al.   DEVELOPMENTAL CELL

Distinct Functions of Evolutionary Conserved MSF1 and Late Embryogenesis Abundant (LEA)-like Domains in Mitochondria

(2011) Brandon M. Hall et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Principles for the post-GWAS functional characterization of cancer risk loci

(2011) Matthew L Freedman et al.   NATURE GENETICS

Embryo death in cattle: an update

(2011) M. G. Diskin et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

Histone Modifications at the Blastocyst Axin1Fu Locus Mark the Heritability of In Vitro Culture-Induced Epigenetic Alterations in Mice1

(2010) Raul Fernandez-Gonzalez et al.   BIOLOGY OF REPRODUCTION

The Transcription Factor TCFAP2C/AP-2  Cooperates with CDX2 To Maintain Trophectoderm Formation

(2010) P. Kuckenberg et al.   MOLECULAR AND CELLULAR BIOLOGY

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome

(2009) D. L. Adelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Reprogramming of Transcription Factor Ap-2γ in Bovine Somatic Cell Nuclear Transfer Preimplantation Embryos and Placentomes

(2009) Kenneth I. Aston et al.   Cloning Stem Cells

Alu element-mediated gene silencing

(2008) Ling-Ling Chen et al.   EMBO JOURNAL

Possible involvement of SINEs in mammalian-specific brain formation

(2008) T. Sasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation development in vivo

(2008) W. A. Kues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Embryonic and Early Foetal Losses in Cattle and Other Ruminants

(2008) MG Diskin et al.   REPRODUCTION IN DOMESTIC ANIMALS

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY