Retrotransposons shape species-specific embryonic stem cell gene expression
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Title
Retrotransposons shape species-specific embryonic stem cell gene expression
Authors
Keywords
Murine Leukaemia Virus, Preimplantation Embryo, Human ESCs, Mouse ESCs, Repression Pathway
Journal
Retrovirology
Volume 12, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-05-29
DOI
10.1186/s12977-015-0173-5
References
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Related references
Note: Only part of the references are listed.- Enhancer Evolution across 20 Mammalian Species
- (2015) Diego Villar et al. CELL
- Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells
- (2015) Jonathan Göke et al. Cell Stem Cell
- The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses
- (2015) Gernot Wolf et al. GENES & DEVELOPMENT
- Retroviral envelope gene captures andsyncytinexaptation for placentation in marsupials
- (2015) Guillaume Cornelis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- TRIM28 Represses Transcription of Endogenous Retroviruses in Neural Progenitor Cells
- (2015) Liana Fasching et al. Cell Reports
- hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells
- (2015) Peter J. Thompson et al. PLoS Genetics
- Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human
- (2014) Yasuhiro Takashima et al. CELL
- Systematic Identification of Culture Conditions for Induction and Maintenance of Naive Human Pluripotency
- (2014) Thorold W. Theunissen et al. Cell Stem Cell
- Identification of Ssm1b, a novel modifier of DNA methylation, and its expression during mouse embryogenesis
- (2014) S. Ratnam et al. DEVELOPMENT
- A Role for Retrotransposon LINE-1 in Fetal Oocyte Attrition in Mice
- (2014) Safia Malki et al. DEVELOPMENTAL CELL
- Evolutionally dynamic L1 regulation in embryonic stem cells
- (2014) N. Castro-Diaz et al. GENES & DEVELOPMENT
- piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells
- (2014) D. Pezic et al. GENES & DEVELOPMENT
- Deep Vertebrate Roots for Mammalian Zinc Finger Transcription Factor Subfamilies
- (2014) Hui Liu et al. Genome Biology and Evolution
- Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency
- (2014) Marc Friedli et al. GENOME RESEARCH
- Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements
- (2014) Priscilla Turelli et al. GENOME RESEARCH
- Ectopic DNMT3L Triggers Assembly of a Repressive Complex for Retroviral Silencing in Somatic Cells
- (2014) T.-H. Kao et al. JOURNAL OF VIROLOGY
- Retroviral Transcriptional Regulation and Embryonic Stem Cells: War and Peace
- (2014) Sharon Schlesinger et al. MOLECULAR AND CELLULAR BIOLOGY
- Suv39h-Dependent H3K9me3 Marks Intact Retrotransposons and Silences LINE Elements in Mouse Embryonic Stem Cells
- (2014) Aydan Bulut-Karslioglu et al. MOLECULAR CELL
- PRMT5 Protects Genomic Integrity during Global DNA Demethylation in Primordial Germ Cells and Preimplantation Embryos
- (2014) Shinseog Kim et al. MOLECULAR CELL
- An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
- (2014) Frank M. J. Jacobs et al. NATURE
- Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
- (2014) Jichang Wang et al. NATURE
- Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
- (2014) Alexandre Fort et al. NATURE GENETICS
- The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
- (2014) Xinyi Lu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1
- (2014) D. Leung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
- (2014) M. Ohnuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age
- (2014) Michael Van Meter et al. Nature Communications
- Positive Selection and Multiple Losses of the LINE-1-Derived L1TD1 Gene in Mammals Suggest a Dual Role in Genome Defense and Pluripotency
- (2014) Richard N. McLaughlin et al. PLoS Genetics
- Regulation of Mouse Retroelement MuERV-L/MERVL Expression by REX1 and Epigenetic Control of Stem Cell Potency
- (2014) Jon Schoorlemmer et al. Frontiers in Oncology
- The diversity of zinc-finger genes on human chromosome 19 provides an evolutionary mechanism for defense against inherited endogenous retroviruses
- (2013) S Lukic et al. CELL DEATH AND DIFFERENTIATION
- Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline
- (2013) James H. Crichton et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET
- (2013) H. M. Rowe et al. DEVELOPMENT
- Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor
- (2013) Graziano Martello et al. EMBO JOURNAL
- EBP1, a Novel Host Factor Involved in Primer Binding Site-Dependent Restriction of Moloney Murine Leukemia Virus in Embryonic Cells
- (2013) G. Z. Wang et al. JOURNAL OF VIROLOGY
- Differential L1 regulation in pluripotent stem cells of humans and apes
- (2013) Maria C. N. Marchetto et al. NATURE
- Derivation of novel human ground state naive pluripotent stem cells
- (2013) Ohad Gafni et al. NATURE
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts
- (2013) Sarah Geisler et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA
- (2013) Anas Fadloun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Global and Stage Specific Patterns of Krüppel-Associated-Box Zinc Finger Protein Gene Expression in Murine Early Embryonic Cells
- (2013) Andrea Corsinotti et al. PLoS One
- Our Viral Inheritance
- (2013) R. A. Weiss et al. SCIENCE
- Zfp819, a novel KRAB-zinc finger protein, interacts with KAP1 and functions in genomic integrity maintenance of mouse embryonic stem cells
- (2013) Xiaoying Tan et al. Stem Cell Research
- Transposable elements as genetic regulatory substrates in early development
- (2013) Wesley D. Gifford et al. TRENDS IN CELL BIOLOGY
- Modulation of LINE-1 and Alu/SVA Retrotransposition by Aicardi-Goutières Syndrome-Related SAMHD1
- (2013) Ke Zhao et al. Cell Reports
- Proviral Silencing in Embryonic Cells Is Regulated by Yin Yang 1
- (2013) Sharon Schlesinger et al. Cell Reports
- Endogenous retroviruses: acquisition, amplification and taming of genome invaders
- (2013) Marie Dewannieux et al. Current Opinion in Virology
- The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
- (2013) Pierre-Étienne Jacques et al. PLoS Genetics
- RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells
- (2013) Constance Ciaudo et al. PLoS Genetics
- Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
- (2012) Gilad D. Evrony et al. CELL
- The Transcriptional and Epigenomic Foundations of Ground State Pluripotency
- (2012) Hendrik Marks et al. CELL
- Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
- (2012) Dominic Schmidt et al. CELL
- Silencing of proviruses in embryonic cells: efficiency, stability and chromatin modifications
- (2012) Sharon Schlesinger et al. EMBO REPORTS
- TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
- (2012) H. M. Rowe et al. GENOME RESEARCH
- Endogenous viruses: insights into viral evolution and impact on host biology
- (2012) Cédric Feschotte et al. NATURE REVIEWS GENETICS
- Expression of endogenous retroviruses is negatively regulated by the pluripotency marker Rex1/Zfp42
- (2012) D. Guallar et al. NUCLEIC ACIDS RESEARCH
- HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
- (2012) Federico A Santoni et al. Retrovirology
- Microarray Analysis of LTR Retrotransposon Silencing Identifies Hdac1 as a Regulator of Retrotransposon Expression in Mouse Embryonic Stem Cells
- (2012) Judith Reichmann et al. PLoS Computational Biology
- DNA Methylation and SETDB1/H3K9me3 Regulate Predominantly Distinct Sets of Genes, Retroelements, and Chimeric Transcripts in mESCs
- (2011) Mohammad M. Karimi et al. Cell Stem Cell
- Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
- (2011) Shi-Yan Ng et al. EMBO JOURNAL
- Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A
- (2011) Todd S. Macfarlan et al. GENES & DEVELOPMENT
- Coevolution of retroelements and tandem zinc finger genes
- (2011) J. H. Thomas et al. GENOME RESEARCH
- Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility
- (2011) Silke Wissing et al. HUMAN MOLECULAR GENETICS
- Somatic retrotransposition alters the genetic landscape of the human brain
- (2011) J. Kenneth Baillie et al. NATURE
- The Etiology of Multiple Sclerosis: Genetic Evidence for the Involvement of the Human Endogenous Retrovirus HERV-Fc1
- (2011) Bjørn A. Nexø et al. PLoS One
- Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing
- (2011) D. C. Leung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation
- (2011) Elisa Närvä et al. STEM CELLS
- Silencing of endogenous retroviruses: when and why do histone marks predominate?
- (2011) Danny C. Leung et al. TRENDS IN BIOCHEMICAL SCIENCES
- Dynamic control of endogenous retroviruses during development
- (2011) Helen M. Rowe et al. VIROLOGY
- Retrotransposon-Induced Heterochromatin Spreading in the Mouse Revealed by Insertional Polymorphisms
- (2011) Rita Rebollo et al. PLoS Genetics
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis
- (2010) Fuchou Tang et al. Cell Stem Cell
- The origin and identity of embryonic stem cells
- (2010) J. Nichols et al. DEVELOPMENT
- Polycomb complexes act redundantly to repress genomic repeats and genes
- (2010) M. Leeb et al. GENES & DEVELOPMENT
- Repression of Retrotransposal Elements in Mouse Embryonic Stem Cells Is Primarily Mediated by a DNA Methylation-independent Mechanism
- (2010) Leah K. Hutnick et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Epigenetic silencing of engineered L1 retrotransposition events in human embryonic carcinoma cells
- (2010) Jose L. Garcia-Perez et al. NATURE
- KAP1 controls endogenous retroviruses in embryonic stem cells
- (2010) Helen M. Rowe et al. NATURE
- Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
- (2010) Toshiyuki Matsui et al. NATURE
- Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
- (2010) Sabine Loewer et al. NATURE GENETICS
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
- (2010) Björn Lamprecht et al. NATURE MEDICINE
- Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs
- (2010) J. Hanna et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SVA retrotransposons: Evolution and genetic instability
- (2010) Dustin C. Hancks et al. SEMINARS IN CANCER BIOLOGY
- A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
- (2010) Miriam K. Konkel et al. SEMINARS IN CANCER BIOLOGY
- KRAB–Zinc Finger Proteins and KAP1 Can Mediate Long-Range Transcriptional Repression through Heterochromatin Spreading
- (2010) Anna C. Groner et al. PLoS Genetics
- Naive and Primed Pluripotent States
- (2009) Jennifer Nichols et al. Cell Stem Cell
- L1 retrotransposition in human neural progenitor cells
- (2009) Nicole G. Coufal et al. NATURE
- Embryonic stem cells use ZFP809 to silence retroviral DNAs
- (2009) Daniel Wolf et al. NATURE
- Adaptive Evolution in Zinc Finger Transcription Factors
- (2009) Ryan O. Emerson et al. PLoS Genetics
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes
- (2008) S. Kuramochi-Miyagawa et al. GENES & DEVELOPMENT
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
- Primer Binding Site-Dependent Restriction of Murine Leukemia Virus Requires HP1 Binding by TRIM28
- (2008) D. Wolf et al. JOURNAL OF VIROLOGY
- A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
- (2008) Alexei A. Aravin et al. MOLECULAR CELL
- The ground state of embryonic stem cell self-renewal
- (2008) Qi-Long Ying et al. NATURE
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