The differential expression patterns of paralogs in response to stresses indicate expression and sequence divergences

Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

(2019) Zhenhui Zhong et al.   Rice

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

(2019) Yingyao Zhou et al.   Nature Communications

Intrachromosomal colocalization strengthens co-expression, co-modification and evolutionary conservation of neighboring genes

(2018) Shuaibin Lian et al.   BMC GENOMICS

Flavin Monooxygenase-Generated N-Hydroxypipecolic Acid Is a Critical Element of Plant Systemic Immunity

(2018) Michael Hartmann et al.   CELL

Functional Divergence between Subgenomes and Gene Pairs after Whole Genome Duplications

(2018) Zhikai Liang et al.   Molecular Plant

Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms

(2018) Ren Ren et al.   Molecular Plant

Two chloroplast-localized proteins: AtNHR2A and AtNHR2B, contribute to callose deposition during nonhost disease resistance in Arabidopsis

(2018) Raksha Singh et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arabidopsis galactinol synthases 1 (AtGOLS1) negatively regulates seed germination

(2018) Ji-Hye Jang et al.   PLANT SCIENCE

Evolution and Expression Divergence of E2 Gene Family under Multiple Abiotic and Phytohormones Stresses in Brassica rapa

(2018) Nadeem Khan et al.   Biomed Research International

NRAMP2, a trans-Golgi network-localized manganese transporter, is required for Arabidopsis root growth under manganese deficiency

(2017) Huiling Gao et al.   NEW PHYTOLOGIST

WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis

(2017) Jing Li et al.   PLoS One

The FOUR LIPS (FLP) and MYB88 genes conditionally suppress the production of nonstomatal epidermal cells in Arabidopsis cotyledons

(2016) M. Yang   AMERICAN JOURNAL OF BOTANY

Expression Divergence Is Correlated with Sequence Evolution but Not Positive Selection in Conifers

(2016) Kathryn A. Hodgins et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence in gene expression within and between two closely related flycatcher species

(2016) Severin Uebbing et al.   MOLECULAR ECOLOGY

Synergistic Activation ofRD29AVia Integration of Salinity Stress and Abscisic Acid inArabidopsis thaliana

(2016) Sang Y. Lee et al.   PLANT AND CELL PHYSIOLOGY

CYTOKININ RESPONSE FACTOR2 ( CRF2 ) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis

(2016) Jin Jeon et al.   PLANT CELL

Transcriptome dynamics of Arabidopsis during sequential biotic and abiotic stresses

(2016) Silvia Coolen et al.   PLANT JOURNAL

NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis

(2016) Dawei Yan et al.   Nature Communications

The number of known plants species in the world and its annual increase

(2016) MAARTEN J.M. CHRISTENHUSZ et al.   Phytotaxa

Expression Divergence of Duplicate Genes in the Protein Kinase Superfamily in Pacific Oyster

(2015) Dahai Gao et al.   Evolutionary Bioinformatics

Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization

(2015) Jean-Francois Gout et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Recently Evolved Isoform of the Transcription Factor BES1 Promotes Brassinosteroid Signaling and Development inArabidopsis thaliana

(2015) Jianjun Jiang et al.   PLANT CELL

Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance

(2015) Paul J. Zwack et al.   PLANT CELL REPORTS

WRKY40 and WRKY6 act downstream of the green leaf volatileE-2-hexenal in Arabidopsis

(2015) Rossana Mirabella et al.   PLANT JOURNAL

The Small Ethylene Response Factor ERF96 is Involved in the Regulation of the Abscisic Acid Response in Arabidopsis

(2015) Xiaoping Wang et al.   Frontiers in Plant Science

Comparative Transcriptome Analyses Reveal Core Parasitism Genes and Suggest Gene Duplication and Repurposing as Sources of Structural Novelty

(2014) Zhenzhen Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The bHLH Transcription Factor HBI1 Mediates the Trade-Off between Growth and Pathogen-Associated Molecular Pattern-Triggered Immunity in Arabidopsis

(2014) M. Fan et al.   PLANT CELL

Ethylene plays an essential role in the recovery of Arabidopsis during post-anaerobiosis reoxygenation

(2014) KUEN-JIN TSAI et al.   PLANT CELL AND ENVIRONMENT

The karrikin response system of Arabidopsis

(2014) Mark T. Waters et al.   PLANT JOURNAL

bHLH05 Is an Interaction Partner of MYB51 and a Novel Regulator of Glucosinolate Biosynthesis in Arabidopsis

(2014) Henning Frerigmann et al.   PLANT PHYSIOLOGY

The Carbon/Nitrogen Regulator ARABIDOPSIS TOXICOS EN LEVADURA31 Controls Papilla Formation in Response to Powdery Mildew Fungi Penetration by Interacting with SYNTAXIN OF PLANTS121 in Arabidopsis

(2014) S. Maekawa et al.   PLANT PHYSIOLOGY

Sequence, Structural and Expression Divergence of Duplicate Genes in the Bovine Genome

(2014) Xiaoping Liao et al.   PLoS One

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl

(2014) Eunkyoo Oh et al.   eLife

Evolution of the Correlation between Expression Divergence and Protein Divergence in Mammals

(2013) Maria Warnefors et al.   Genome Biology and Evolution

Divergence in Gene Expression Is Uncoupled from Divergence in Coding Sequence in a Secondarily Woody Sunflower

(2013) Brook T. Moyers et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

A Major Facilitator Superfamily Transporter Plays a Dual Role in Polar Auxin Transport and Drought Stress Tolerance in Arabidopsis

(2013) E. Remy et al.   PLANT CELL

A bHLH-Type Transcription Factor, ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR/JA-ASSOCIATED MYC2-LIKE1, Acts as a Repressor to Negatively Regulate Jasmonate Signaling inArabidopsis

(2013) Masaru Nakata et al.   PLANT CELL

The Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi

(2013) Yosuke Maruyama et al.   PLANT SCIENCE

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.)

(2012) Joan Ho-Huu et al.   BMC EVOLUTIONARY BIOLOGY

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis

(2012) Sangmin Lee et al.   PLANT JOURNAL

Molecular Evolution and Structural Features of IRAK Family Members

(2012) Vijayakumar Gosu et al.   PLoS One

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid

(2011) J.-H. Chen et al.   PLANT PHYSIOLOGY

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

(2011) Yupeng Wang et al.   PLoS One

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

Functional Analysis of the Arabidopsis PAL Gene Family in Plant Growth, Development, and Response to Environmental Stress

(2010) J. Huang et al.   PLANT PHYSIOLOGY

Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales

(2009) Michael S. Barker et al.   Genome Biology and Evolution

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis

(2009) Rosangela Sozzani et al.   PLANT MOLECULAR BIOLOGY

Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes

(2009) M. D. Lehti-Shiu et al.   PLANT PHYSIOLOGY

Increased Expression and Protein Divergence in Duplicate Genes Is Associated with Morphological Diversification

(2009) Kousuke Hanada et al.   PLoS Genetics

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Genomic Clues to the Evolutionary Success of Polyploid Plants

(2008) Matthew J. Hegarty et al.   CURRENT BIOLOGY

Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants

(2008) Takeshi Mizuno et al.   PLANT AND CELL PHYSIOLOGY